BAC Information

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BAC

Clone NameMSMg01-176P10
Chromosome5 (Build37)
Map Location 4,755,662 - 4,755,932
singlet/doubletsinglet
Overlap geneFzd1
Upstream geneAnkib1, Krit1, 4932412H11Rik, LOC100041009, LOC667617, Mterf, Akap9, Cyp51, ENSMUSG00000053178, LOC100041073
Downstream geneLOC667678, Pftk1, 1700015F17Rik, Cldn12, Gtpbp10, LOC667699, EG667705, A330021E22Rik, Steap2, Steap1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-176P10.T7 (MSMg01no176_p10.b1)MSMg01-176P10.TJ (MSMg01no176_p10.g1)
ACCAG371502AG371503
length1,2581,221
length of high quality
(start - end)
271 (136 - 406)376 (71 - 446)
definitionCHROMAT_FILE: MSMg01no176_p10.b1 PHD_FILE: MSMg01no176_p10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:49:22 2005CHROMAT_FILE: MSMg01no176_p10.g1 PHD_FILE: MSMg01no176_p10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:49:22 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
CGGTTCTNNNNNCCATCTCTGGGCGCTAACGACTCCTAAGGGAGAGGATC
CGCGGAATTCCTTGGGGCCAGCTTCCCCTTTAAGGCTCGGATCAGGCCAA
AAAAGGGTAAGGTAAGACCTTAAATTCCCACGCCAGTCTCCCCCTGTTTG
CTGTTGGTAAGCCTCGTGTAGAACTTCCTCCAGGAATTCAGTGTCTTGCC
GGACCAGATCCAGAAGCCCGATGTGATGCCCACAATCAGCGTCATGAGAT
ACTTGATCATGAAGACTGTAAAGTCTGGGCTCATGGGCGTGTGTGGTGGG
ACTCCTCCACCTCCCTGGAGGTGAGGGCAAGGGATGGCATAACTCTTGCA
GCTCTGGGCCACCCAGCTGCGCTCCCACTGGTCCCGAAAGGCCTGTTCAT
AGAAGTTTTTTTTTATGACGATGGTGGCCGGCACAGTGTAGAGGACACTG
AAGACTCCTATTTTTTTTCCCCCCTTCTCCAGCTTCTCTGTCTTGATGAA
AAAATGCTTCATGATGGTGCGGATGCGGAAGAGTGACACGAAACCAGCCA
GCAGGAAAGAAGTGCCAATGAACAGATAAACGAAGAGAGGCGCCAGCACA
AAGCCACGCAGTGCGTCCACGTTGTTGAGCCCCACAAAACACACTCCGCT
CAGTACGTCGCCATCCACCTGGTCCAACGCCAAGATGGTTATAGTTTTGA
TGGCTGGCACAGCCCAGGCGGCTAAATGGAAATACTGTGAGTTGGCCTCG
ATGGCTTCGTGGCCCCACTTCATGCCGGCTGCCAGGAATCAGTTGAGGGA
CAGGATCACCCACCAGATGGAGCTGGCCTTGCTGAATAAGTATAGCATCC
TAATGAGTATAGTGCACCCTTCTTTCTTATTGCCCTGCGCCCTCGTGCGC
GCCCCGTCCTCCGGAAACTTGTTTCTGCCCCACACCCGGACCCTCCATTA
AAATGCCGTCGAATGTATTTCCTTCGTCACCGTTGTTTTTTCTTTCTCAT
ATCAAAATGTTTGGTCCCTTTCCCCGTTATCTTCAATTCCCTTATTGCCC
CCTAACAACTTTTACTCCCCTTCTTTACTCTGTCATTTTTCACTCCCTTT
NCCTTACCCTATTCCCTTTTTCTATTTCTCCAAAATTTTCTTCTTCTTGT
GTCTCTAATCTCTTATTTCCCTCTATCTCCTCTATGCTCTTCCCTCATTC
TCTCTCTCTCTTNTCTTTCCTTCTATCATCCTTTTCATCCTTCTCTTCTC
TCCATCAC
NNTTTATGATTGGAGGCTGGGGCGCCXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTTTGTTTAGCTCTGTGCCCCATTTTTTAAT
GGGGTAATTTGGTTTTCTGCAGTCCATCTTCTTGAGTTCTTTATATATAT
TGGATATTAGTCCCCTATCTGATTTAGGATTGGTAAAGATCTTTTCCCAA
TCTGTTGGTGGCCTTTCTGTCGCTATACCAGTACCATGCAGTTTTTATCA
CTATTGCTCTGTAGTAAAGCTTTAGGTCAGGTGTGGTGATTCCACCAGAG
ATTCTTTTATCATTGAGAAGAGTTTTTGCTATCCTAGGTTTCTTGTTATT
CCAGATGAATTTGCAAATTGCCCTTTCTAACTTAGTGAAAAATTGATTTG
TAATTTTGATGGGGATTGCATTGAATCTGTAGATTGCTTTCGGCAATATT
TTTTTTTCCCCCCCCCCTTGATCCTCTCACTCCATTAAAAAAAGAGAGCT
TTCCATCCTCTGCGCTTTCAAATTCTAGAGGCAGCGTCATAAGATGATGA
AGCTGAAATCTGCATCCCCATCAAATACATTGTTCTTCATTTGAGCTAAC
TGTCAGTAAGTCTTTGACCTGTAACCTGATTTTTTTTTTCTTTAAGTGGG
ACCCACCTTGTTTTTGACGATGCTCCCATTCCTACCCTTTTAATGCCTTC
AATATACAAGGTGACATTGTTTAAGGGGTAGAGACACTGTCTTCTGTGTC
ACCATAAAATACCAATGTGACATTAACATAAAGGTTTTTAGCTCTGTAGG
TTCTTACTGTCTTGGGCGGTGTCCCGTCTGTAAGGGAATAAACTTGAAGA
GAGAGTTCTGCCTTATGCTAACTGCTCTCTGTTTCTCCCCTTTTTATTGT
ACTCCAAGATTCCCCAGTGGTTGATATAATTTCTCCCTGCCAACTTTAAG
GTGGGCATCAAAACCTGCCTCCTGGTCCCTTCAATAAAGGTCTGGTGATT
TTCCTTTCCCTCCTTTTGGTAAAACCTTGGCTTATGTTTTAAGTGATAAA
TTGGGTTCCTATTTTTTAGCTCTTTTTTCTTTTTGTTTAGTATGCTATTC
TCCCCTCCCTTAGAAGCTCTATCATTAATATCCTCCTTTTCTAATTCCTC
TTCCTTCCAAAATTACTAACTATCCTTCTCTTTTCTTGTGATATTTTCTC
TCTTTTAATTTTCTCTCCGTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no176_p10.b1 MSMg01no176_p10.b1 CHROMAT_FILE:
MSMg01no176_p10.b1 PHD_FILE: MSMg01no176_p10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:49:22 2005
         (271 letters)



>mm_chr5_4755462_4756132
          Length = 671

 Score =  516 bits (267), Expect = e-151
 Identities = 270/271 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   gtctccccctgtttgctgttggtaagcctcgtgtagaacttcctccaggaattcagtgtc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gtctccccctgtttgctgttggtaagcctcgtgtagaacttcctccaggaattcagtgtc 260

                                                                       
Query: 61  ttgccggaccagatccagaagcccgatgtgatgcccacaatcagcgtcatgagatacttg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttgccggaccagatccagaagcccgatgtgatgcccacaatcagcgtcatgagatacttg 320

                                                                       
Query: 121 atcatgaagactgtaaagtctgggctcatgggcgtgtgtggtgggactcctccacctccc 180
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 321 atcatgaagactgtaaagtctgggctcatgggcgggtgtggtgggactcctccacctccc 380

                                                                       
Query: 181 tggaggtgagggcaagggatggcataactcttgcagctctgggccacccagctgcgctcc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tggaggtgagggcaagggatggcataactcttgcagctctgggccacccagctgcgctcc 440

                                          
Query: 241 cactggtcccgaaaggcctgttcatagaagt 271
           |||||||||||||||||||||||||||||||
Sbjct: 441 cactggtcccgaaaggcctgttcatagaagt 471


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 271
Length of database: 671
Length adjustment: 9
Effective length of query: 262
Effective length of database: 662
Effective search space:   173444
Effective search space used:   173444
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)