BAC Information

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BAC

Clone NameMSMg01-177C21
Chromosome5 (Build37)
Map Location 32,709,068 - 32,709,591
singlet/doubletsinglet
Overlap genenone
Upstream geneZfp512, 4930548H24Rik, Xab1, Supt7l, Slc4a1ap, Mrpl33, Rbks, LOC100040000, Bre, Fosl2, LOC672217, Plb1, EG665350
Downstream geneLOC545743, Ppp1cb, LOC634553, LOC675983, Yes1, LOC100039775, Pisd, C330019G07Rik, LOC100040141, Depdc5, Ywhah, LOC100040169, Slc5a1, Spon2, Ctbp1, Maea
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-177C21.T7 (MSMg01no177_c21.b1)MSMg01-177C21.TJ (MSMg01no177_c21.g1)
ACCAG371644AG371645
length711694
length of high quality
(start - end)		597 (71 - 667)525 (78 - 602)
definitionCHROMAT_FILE: MSMg01no177_c21.b1 PHD_FILE: MSMg01no177_c21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:49:42 2005CHROMAT_FILE: MSMg01no177_c21.g1 PHD_FILE: MSMg01no177_c21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:49:42 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCTTTGTTTCCCTCTGCATCCCATTTTTTAATGGGGTTATTTGATC
TTTTTGGAGTCACCTTCTTGAGCTCTTTATATATATTGGATATTAGTCCC
CTATCTGATTTAGAATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGCCT
TTTTGTCTTATTGACGGTGTCTTTTGCCTTACAGAAGCTTTGCAATTTTA
TGAGGTCCATTTGTCGGATTCTCAATCTTACAGCACAAGCCATTGCTGTT
CTATTCAGGAATTTTTCCCCTGTGACCATATCTTTGAGGCTTTTCCCCAC
TTTCACCTCTATAAGTTTCAGTGTCTCTGGTTTTTTATGGAGTTCCTTGA
TCCACTTAGATTTGACCTTAGTACAAGGAGATAGGAATGAATCAATTCGC
ATTCTTCTACATGTTAACTGCCAGTTGTGCCAGCACCATTTGTTGAAAAT
GCTGTCTTTTTTCCACTGGATGGTTTTAGCTCCCTTGTCAAAGATCAAGT
GACCATAGGTGTGTGGGTTCATTTTTGGGTCTTCAATTCTATTCATTTGG
TCTACTTGTCTGTCGCTATACCAGTACCATGCAGTTTTTATCACAATTGC
TCTGTAGTACAGCTTTAGATCAGGCATGGTGATTCCACCAGAGGTTTTTA
TCCTTGAGAAG

NCGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCTTCCCACTCAGGTACAAGTAAT
AATCACTAATACCTCCCAAGAACATGGATGTAGTGAGGGCTGGGATCTTA
TGCTCAGGCACTAAAGACATCTATCCCATTTCACATCAGAATCTCCAAAA
GGACTTGTGTCTGAGTTGTGCGGCATCACAGCCAGGCCCTGGCTGTGTTT
TAGCACTGTCTCCTTTGCCATACTTGCCACAGCAATGCCATCTCCCATTT
TGTAACTCCAAGAGCTCTGGAAATGTTAATTAATACAAGACCCCACCTAC
GACAGCAGACTTGCAGGCAACTTGTTCTACTTCCAATTGCAGCTTCTTTC
CTACCTACCACTCCCTTTAAGAAGGAAAGGCATGGCTCCTAAGGCCCAAG
CCAGCCCTTGTTCCAGTACAGAGATCACATGCCCAGCCTGAAACACAGCT
TCAGCTGCTCTCCTAGCTGATTTCAAATGACTGCTTCGCATATATCATCC
CATCTGTATTAGGCACCCACATAATGTATGGGTTCCAGGTACCACAACCC
CCCAATCTTAAGGGCATGACCTTTCTGCCTCAGGTTGCTTCATCTATAAA
ATGACCCAATAGCTCCCAACTCCTGGGGGGTGGGTGGGGAACCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no177_c21.g1 MSMg01no177_c21.g1 CHROMAT_FILE:
MSMg01no177_c21.g1 PHD_FILE: MSMg01no177_c21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:49:42 2005
         (525 letters)



>mm_chr5_32708868_32709791
          Length = 924

 Score =  907 bits (469), Expect = 0.0
 Identities = 511/525 (97%), Gaps = 1/525 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   cttcccactcaggtacaagtaataatcactaatacctcccaagaacatggatgtagtgag 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 201 cttcccactcaggtacaagtaataatcactaatacctcccaagaacatggatgttgtgag 260

                                                                       
Query: 61  ggctgggatcttatgctcaggcactaaagacatctatcccatttcacatcagaatctcca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggctgggatcttatgctcaggcactaaagacatctatcccatttcacatcagaatctcca 320

                                                                       
Query: 121 aaaggacttgtgtctgagttgtgcggcatcacagccaggccctggctgtgttttagcact 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 321 aaaggacttgtgtctgagttgtgcggcatcacagccaggccctggctgtgtcttagcact 380

                                                                       
Query: 181 gtctcctttgccatacttgccacagcaatgccatctcccattttgtaactccaagagctc 240
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 381 gtctcctttgccatacttgccacagcaatgccatctcccattttgtaactccaagaactc 440

                                                                       
Query: 241 tggaaatgttaattaatacaagaccccacctacgacagcagacttgcaggcaacttgttc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 441 tggaaatgttaattaatacaagaccccacctacgacagcagacttgcaggcaactcgttc 500

                                                                       
Query: 301 tacttccaattgcagcttctttcctacctaccactccctttaagaaggaaaggcatggct 360
           | |||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||
Sbjct: 501 tccttccaattgcagcttctttcctacctaccactcccattaagaaggaaagtcatggct 560

                                                                       
Query: 361 cctaaggcccaagccagcccttgttccagtacagagatcacatgcccagcctgaaacaca 420
            |||||| ||||| ||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 561 tctaaggtccaagtcagcccttgttccagcacagagatcacatgcccagcctgaaacaca 620

                                                                       
Query: 421 gcttcagctgctctcctagctgatttcaaatgactgcttcgcatatatcatcccatctgt 480
           |||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gcttcagccgctcgcctagctgatttcaaatgactgcttcgcatatatcatcccatctgt 680

                                                        
Query: 481 attaggcacccacataatgtatgggttccaggtaccacaaccccc 525
           ||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 681 attaggcacccacataatgtatgggttccag-taccacaaccccc 724


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 525
Length of database: 924
Length adjustment: 10
Effective length of query: 515
Effective length of database: 914
Effective search space:   470710
Effective search space used:   470710
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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