CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTTCACGATGATAATTAAAGAGGGGGGAGAATGGTTTTTAAAAGAG
AAAAAAACTAAATTTTTAAACTGCGTCTAAAATGTAAGAAATACAAAAGG
GAAAATGATCCACAGTTAAAGCACAAAATTATAAGAAAGGATGAAGAAAA
ACACCACCACCTCACTTAAATAAAAACTAAAGTCTCTGCAGGATCGAGGA
GGCTGTTCTGTTGCAACAGCCCTGGCTGCTCTTCCAAAGGACCTAGGTTC
AATGCCCGGCAGCCACACTGAAGCTATTGACCACTTGTAACTCTAGCTCC
AGCCGATCTGAATCCTCCTTTTACATAATTACACAGACGTATGTGCATTC
AGAACACTCCTAGCCACAAAATAAAAACAAATCTTTAAGGCAAACTTAAA
TTTTTTTCTTTGGCTGTATAATAAGTAAAAGTGAAATGCATGTAAATAGC
AAAAGGGTGGGAAAAAGAAAAAGTGTTCTAAGGTTGATGTGTTATTATCA
TCTCTTTTCTCATTTTATTTTTTAATTGAATAAAATTAATAAAATTTAAT
TGAAGATCAGTAAATGCTCGTGATATTCTCCTTCCCTTCCTACCTAAATC
CACACCCTTTCTTTCACTTTCTTATTAGAAAACAGACATCTATAATAATA
ATAACAATAATAATAATA

CAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCACCAGAGGAAAGGCTGAGAAAC
ACCTGAAAAAATGTTCAACATCCTTAATCATCAGAGAAATGCAAATCAAA
ACAACCCTGAGATTCCACCTCACACCAGTCAAAATGGCTAAGATCAAAAA
TTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAGAGGAACACTCC
TCCATTGTTGGTGGGATTGCAGGCCTGTACAACCACTCTGGAAATCAATT
TGCAGGTCCTCAGAAAATTGGACATAGTACTACCGGAGGATCCAGCAATA
CCTCTCCTGGGCATATATCCAGAAGATGTCCCAACCGGTAAGAATGACAC
ATGCTCCACTATGTTCATACCACCCTTATTTATAATAGCCAGAAGCTGGA
AAGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAAATGTGGTAC
ATTTACACAATGGAGTACTACTCAGCTATTACAAAGAATGAATTTATGAA
ATTCCTAGGCAAATGGATAGACCTGGAGGGCATCATCCTGAGTGAGGTAA
CCCAATCACAAAAGAATTCAAATGAAATGTACTCACTGATAAGTGGATAT
TAGCCCAGAAACTTAGTATAGCGAGATATAAGGTACAAGATGCAAAACAC
ATGAAACTGAAGAAGAACG

Query= MSMg01no177_d12.b1 MSMg01no177_d12.b1 CHROMAT_FILE:
MSMg01no177_d12.b1 PHD_FILE: MSMg01no177_d12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:49:45 2005
         (673 letters)



>mm_chr5_4278647_4279716
          Length = 1070

 Score = 1187 bits (614), Expect = 0.0
 Identities = 655/670 (97%), Gaps = 4/670 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcttcacgatgataattaaagagggggg-agaatggtttttaaaagagaaaaaaac 63
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 204 gaattcttcacgatgataattaaagagggggggagaatggtttttaaaagagaaaaaaac 263

                                                                       
Query: 64  taaatttttaaactgcgtctaaaatgtaagaaatacaaaagggaaaatgatccacagtta 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 taaatttttaaactgcgtctaaaatgtaagaaatacaaaagggaaaatgatccacagtta 323

                                                                       
Query: 124 aagcacaaaattataagaaaggatgaagaaaaacaccaccacctcacttaaataaaaact 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 aagcacaaaattataagaaaggatgaagaaaaacaccaccacctcacttaaataaaaact 383

                                                                       
Query: 184 aaagtctctgcaggatcgaggaggctgttctgttgcaacagccctggctgctcttccaaa 243
           |||||||||| |||||||||||| |||||||||||||| |||||||||||||||||||||
Sbjct: 384 aaagtctctgaaggatcgaggagactgttctgttgcaatagccctggctgctcttccaaa 443

                                                                       
Query: 244 ggacctaggttcaatgcccggcagccacactgaagctattgaccacttgtaactctagct 303
           |||||||||||||||| || |||||||||||||||||||||||||||||||||||||| |
Sbjct: 444 ggacctaggttcaatgtccagcagccacactgaagctattgaccacttgtaactctagtt 503

                                                                       
Query: 304 ccagccgatctgaatcctccttttacataattacacagacgtatgtgcattcagaacact 363
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 ccagccgatctgaagcctccttttacataattacacagacgtatgtgcattcagaacact 563

                                                                       
Query: 364 cctagccacaaaataaaaacaaatctttaaggcaaacttaaatttttttctttggctgta 423
           ||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 cctagtcataaaataaaaacaaatctttaaggcaaacttaaatttttttctttggctgta 623

                                                                       
Query: 424 taataagtaaaagtgaaatgcatgtaaatagcaaaagggtgggaaaaagaaaaagtgttc 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 taataagtaaaagtgaaatgcatgtaaatagcaaaagggtgggaaaaagaaaaagtgttc 683

                                                                       
Query: 484 taaggttgatgtgttattatcatctcttttctcattttattttttaattgaataaaatta 543
           |||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 taaggttgatgtgttat---catctcttttctcattttattttttaattgaataaaatta 740

                                                                       
Query: 544 ataaaatttaattgaagatcagtaaatgctcgtgatattctccttcccttcctacctaaa 603
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ataaaatttaattgaaaatcagtaaatgctcgtgatattctccttcccttcctacctaaa 800

                                                                       
Query: 604 tccacaccctttctttcactttcttattagaaaacagacatctataataataataacaat 663
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 801 tccacaccctttctttcactttcttattagaaaacagacatctataataataataataat 860

                     
Query: 664 aataataata 673
           ||||||||||
Sbjct: 861 aataataata 870


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 673
Length of database: 1070
Length adjustment: 10
Effective length of query: 663
Effective length of database: 1060
Effective search space:   702780
Effective search space used:   702780
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)