BAC Information

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BAC

Clone NameMSMg01-177F06
Chromosome5 (Build37)
Map Location 134,934,189 - 134,934,474
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039731, LOC666038, LOC100039750, Gats, Wbscr16, Gtf2ird2, Ncf1, Gtf2i, LOC630424, Gtf2ird1
Downstream geneLOC100039820, Clip2, EG666071, Gm52, Rfc2, Lat2, Eif4h, LOC638081, Limk1, Eln, Wbscr28, Cldn13, Wbscr27, Cldn4, Cldn3, Abhd11, Stx1a, Wbscr22, Wbscr18, Vps37d, Mlxipl, Tbl2, Bcl7b, LOC100040069, Baz1b, Fzd9, Fkbp6, Trim50, Nsun5, Pom121, Hip1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-177F06.T7 (MSMg01no177_f06.b1)MSMg01-177F06.TJ (MSMg01no177_f06.g1)
ACCAG371748AG371749
length729727
length of high quality
(start - end)
318 (46 - 363)288 (77 - 364)
definitionCHROMAT_FILE: MSMg01no177_f06.b1 PHD_FILE: MSMg01no177_f06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:49:53 2005CHROMAT_FILE: MSMg01no177_f06.g1 PHD_FILE: MSMg01no177_f06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:49:53 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTGGGATTGCAGGTGTGTGTCACCATACCCGGTAAGCTGTCTTTTT
TGTTGTTAAGATAGGTTCTATGTGGCCTTGGCTGGCATGGGACTTGATAT
GCAGACCACACTGGCCCTGAACTCACAGTGATCCTCCTGCCTCTACCTAT
GGAGCGCTGGGATTATAGGCATGTCTTTTGAGGCAGGGTCTAGAAGTTGA
TCTCAGGCCCTCTTGCTTATGTTGCCAACTGAGCCATCTCCCCAACTCTC
CTCTCTACAGAAGGGCCCGAGGACGGGGGTTCTGAGCGGGAACTGAAGCC
TTTACTGCCTGTTTAATACCCCCTCCCCTCCAGGGATGCTCAAGTTTCAC
ACCCTGGCCGTGGCTGCTCCACAGCCTGAGAGACACTGGGCATCGCCAGA
GCCCCAACCCTCAAGTGATGCCCTGGACTTCTTTGGGGGCAAAGCAAGTG
CCCAGAGGATATTGACTGTGCTGACTGGAAGCCCAAGACCTGAGGCAAGA
TGTGTCCCCAGTCTCACATCTAAAATGAGGCACAACAGTGGCATTTGTGG
GTTTTGTTTTTGTGTTGGCTGCAGGATCTCACTAAGTTACTCAGGCTGAT
CTCAAACTTGTAACCCTCAGTCCTAGTGTTGGGATCGCATCATACCAGGG
NTGTTTTTTTTTTTCCCTTTCTTTGATTG
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAAGACCAGCCTGGTCTACAGAGTG
AGTTCCAGTACAGCCAGGGCTACACAGAGAAACCCTGTCTTGAAACAAAA
CAAAACAAGACAAAAAAAGGATCTACCAGATCCTGACAGAACCTACCTGG
TCTCCTTCTAGATCCCCTCATGCATACACATTAAGTCCAGACCTTAGTGA
CAATTTAGTGACCTTGGATGACCATCTCTGGGGACAGGCTCACAAGCCTC
CTCTCAGTGAGCCAACCAGAAGAGCCCTTGTGCCCACAGAGGGGTTTGGG
CAGAGCACCAGGTATTTTAAACAACCCCCCCACCCGATGGGCCCCTAGAG
TCCTAATAAAGCCTTGAGGCCTTACTAGACAGAACCTCTGACCCACTTGT
GCAGTGCCTGCCCTAGTTTGACACCAAAGCCAGTGCAAATATCAACGATC
TGGTAGCTGGGAGGTAAGGGGGGGGCGTGAGTTCAAATCTTGGCGTTTCC
ACTTTCTACCCAAGTGACCTGGGGCTTGTCTTGGCAGTTCCCCCTGTCTG
AGTTTCCACTTCCCCCTTCCCATAGCCTCTCTGCCAGCTACGGCCTGACT
CCCACAGCGTATAATGCTGAGAACAGCCATCGCTTAGTAAATGTCCACTA
TATGCAAGTCATGTTACATGTAAAATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no177_f06.g1 MSMg01no177_f06.g1 CHROMAT_FILE:
MSMg01no177_f06.g1 PHD_FILE: MSMg01no177_f06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:49:53 2005
         (288 letters)



>mm_chr5_134933989_134934676
          Length = 688

 Score =  530 bits (274), Expect = e-155
 Identities = 283/286 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   aagaccagcctggtctacagagtgagttccagtacagccagggctacacagagaaaccct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aagaccagcctggtctacagagtgagttccagtacagccagggctacacagagaaaccct 260

                                                                       
Query: 61  gtcttgaaacaaaacaaaacaagacaaaaaaaggatctaccagatcctgacagaacctac 120
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtctcgaaacaaaacaaaacaagacaaaaaaaggatctaccagatcctgacagaacctac 320

                                                                       
Query: 121 ctggtctccttctagatcccctcatgcatacacattaagtccagaccttagtgacaattt 180
           |||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct: 321 ctggtctccttctagatctcctcatgcatacacattaagcccagaccttagtgacaattt 380

                                                                       
Query: 181 agtgaccttggatgaccatctctggggacaggctcacaagcctcctctcagtgagccaac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agtgaccttggatgaccatctctggggacaggctcacaagcctcctctcagtgagccaac 440

                                                         
Query: 241 cagaagagcccttgtgcccacagaggggtttgggcagagcaccagg 286
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cagaagagcccttgtgcccacagaggggtttgggcagagcaccagg 486


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 288
Length of database: 688
Length adjustment: 9
Effective length of query: 279
Effective length of database: 679
Effective search space:   189441
Effective search space used:   189441
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)