CTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCTTCATGCGCCTTTGAAAATGCTTTGATACCGTAAATGAAACACT
CCCACTGAGGCCCAAATTAAAAGACGCTCTGTCACTAAATCACATCAGAG
ATTCAACAAAAAAGATTGAAAAATTCATTTTAAACTCATTACAGACTTCC
CCAAACTGGCAGGGATTGTTGACAAGCAGCAGCCTGTGTCCTTGATCAAA
GCTGCCATGAGCTGTTTGCAGAACAGGCTAGTCTAAGGGCAATGTCTCCC
TGTGTGGTTGAGGTTGGCTTAAAATATAAGCAAAGTCCCACTGGGCTCAA
GCCAATCACAGGAGGGAGTGTACAACACAATACCACCTGACACCATCAGG
CTGGAGAGGTGCCTGGTGGGCCAGGGGGTGGCAGGGTTAGAGCATTGACT
GCTCATACAGAGTTCAAATCTCAGCACTCACATGACAGCTCACATGCATG
TGATACTCCAGCTCTGGGGAATCGTCGCCCTCTTCTGGTCTCTATGAGCA
CCTGCACTCACATGGTGTACATACAGTATCAATCATTTACATAAATACGA
GCTGAGTGTCAGGGCTGAGAGTTTTGAGTGTCTTGCACTGCCTAATTTAA
TAAAAGCAATAACTTTTAGAAAGGTTCCCTTCCAGTTCTCACACTTCCAG
AGGGGAAAGTTGGAGTCTAAG

TTTGGGGGGATGCGTAAGCTTGTGGTGGTAATTTTTCGTTACGCGTAAAC
TCTTCCCACCGCGGCGTTTTGTCGGGTGGGGCTCGGGGGGGCACCCCTGT
GCTCTTCGTTAATTTATGCTGTGGGGAGTGGGGTGGGTTTTGGGGCCATC
TACTGTTTCTGTCCAGCCAGGCGGGCGTTCCGTGACGCTGGGGTGTTACG
AGGCAAAACCCCCCCACCGAATGTCGTACGCGACTACTGCATACAACCAT
ATTCCTAGGGAATTACGGGCTGTAATTCTGGGCTTGTTAGGGTACCTTAG
CGGCGGATTTAGAGAGAAGAGGGGGCAACAAATGCGAAAATGGGGGCACA
AGATTTTTATTGTATAGTCCATTACGCCTCCAGTCCATTATATTCTAATA
TAGGCTACAATGTTTAAGAGGAGGTGTATTGCTGGTGAAGAGGCAACCCG
GGGCACTGGAATGTCGAACCCATGGTCGCGGCTGGTGTGGAGTGCAACGC
CTTGGGAGGTATTGCCACTGCTGTACTCCACGTGAATAGGGCCACTTTCG
CACGGGTAGATATGTAGTATACGGGCCCGGCGCGTTTTCTTCCCTCGAGA
CCCTCCCCATTATGAAAGGGCACAGATGATGTCTAGGATGTTTTTGATCA
CGTCGCAGGGTACGGGCATTACCCATCGTTACGATATGGTGTACGGGCAC
TGCTTGCGGTTTGTAGCACGGGGCACCTCGCGGGCTCCACTCAGAATTCT
GCTAGGGTTATGTTCCCTGCCGCGTCACCCTTCTCTTGCTCGTGCGACTT
TTAGCCCACACAAACTAAAATATTTCAACCGCCGCGACGCGCCTTTATCA
CCGCCCCCGCATGTGAAGGAAACCGCCCCCCATTATCCGTTGTCTTGAGG
GAGATAAAAACAACCCCCCTATACCTCCTNNNTGGGACATTTATAAATGC
TCAGCGATATAATTATNNANANNNAGGTTGCTTCNNGCCTGCACTCNTCC
TTNTCGCCAANAATATTAGGNNAAACATTCCGTANAACTCGAAAANCCAG
AAAAACAANTGAANTAGNCTTNGGGNTNCNNNCAAGTNNNNNTGGNNTNT
NTGTCGTNCCANNNCNNNCCTANAGAGGACGGACGCC

Query= MSMg01no177_j01.b1 MSMg01no177_j01.b1 CHROMAT_FILE:
MSMg01no177_j01.b1 PHD_FILE: MSMg01no177_j01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:50:09 2005
         (624 letters)



>mm_chr5_126419879_126420902
          Length = 1024

 Score = 1048 bits (542), Expect = 0.0
 Identities = 568/584 (97%), Gaps = 12/584 (2%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccttcatgcgcctttgaaaatgctttgataccgtaaatgaaacactcccactgag 64
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 572 gaattccttcatgcgcttttgaaaatgctttgataccgtaaatgaaacactcccactgag 513

                                                                       
Query: 65  gcccaaattaaaagacgctctgtcactaaatcacatcagagattcaacaaaaaagattga 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 512 gcccaaattaaaagacgctctgtcactaaatcacatcagagattcaacaaaaaagattga 453

                                                                       
Query: 125 aaaattcattttaaactcattacagacttccccaaactggcagggattgttgacaagcag 184
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 452 aaaattcattttaaactcattacagacttccccaaaccggcagggattgttgacaagcag 393

                                                                       
Query: 185 cagcctgtgtccttgatcaaagctgccatgagctgtttgcagaacaggctagtctaaggg 244
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 392 cagcctgtgtccttgatcaaagctgccatgagctgtttgtagaacaggctagtctaaggg 333

                                                                       
Query: 245 caatgtctccctgtgtggttgaggttggcttaaaatataagcaaagtcccactgggctca 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 caatgtctccctgtgtggttgaggttggcttaaaatataagcaaagtcccactgggctca 273

                                                                       
Query: 305 agccaatcacaggagggagtgtacaacacaataccacctgacaccatcaggctggagagg 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 agccaatcacaggagggagtgtacaacacaataccacctgacaccatcaggctggagagg 213

                                                                       
Query: 365 tgcctggtgggccagggggtggcagggttagagcattgactgctcatacagagttcaaat 424
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 212 tggctggtgggccagggggtggcagggttagagcattgactgctcatacagagttcaaat 153

                                                                       
Query: 425 ctcagcactcacatgacagctcacatgcatgtgatactccagctctggggaatcgtcgcc 484
           |||||||            |||||||||||||||||||||||||||||||||||||||||
Sbjct: 152 ctcagca------------ctcacatgcatgtgatactccagctctggggaatcgtcgcc 105

                                                                       
Query: 485 ctcttctggtctctatgagcacctgcactcacatggtgtacatacagtatcaatcattta 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 104 ctcttctggtctctatgagcacctgcactcacatggtgtacatacagtatcaatcattta 45

                                                       
Query: 545 cataaatacgagctgagtgtcagggctgagagttttgagtgtct 588
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44  cataaatacgagctgagtgtcagggctgagagttttgagtgtct 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 624
Length of database: 1024
Length adjustment: 10
Effective length of query: 614
Effective length of database: 1014
Effective search space:   622596
Effective search space used:   622596
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)