Query= MSMg01no178_h02.b1 MSMg01no178_h02.b1 CHROMAT_FILE:
MSMg01no178_h02.b1 PHD_FILE: MSMg01no178_h02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:51:15 2005
(544 letters)
>mm_chr5_142013589_142014532
Length = 944
Score = 1036 bits (536), Expect = 0.0
Identities = 539/540 (99%)
Strand = Plus / Minus
Query: 5 gaattctgagcacttatatattgacaaaaatcactgagcaacataaagaacattaatttg 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 gaattctgagcacttatatattgacaaaaatcactgagcaacataaagaacattaatttg 685
Query: 65 tgttaaaaggaactactttgtggagcaaagctcgaagcgccttcagggagccatcagcgc 124
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 tgttaaaaggaagtactttgtggagcaaagctcgaagcgccttcagggagccatcagcgc 625
Query: 125 agcaaattgagcaggctctccatgcctcgctctgtgatgctgtgggacacggccgggcca 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 agcaaattgagcaggctctccatgcctcgctctgtgatgctgtgggacacggccgggcca 565
Query: 185 ctgccatctgtgactgtgacacaagttaatgattgcattgttatagattagcctatcgtt 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 ctgccatctgtgactgtgacacaagttaatgattgcattgttatagattagcctatcgtt 505
Query: 245 agaaaacaagaagtctccacagacaagacagaattagacatgttctggggagagcgacgg 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 agaaaacaagaagtctccacagacaagacagaattagacatgttctggggagagcgacgg 445
Query: 305 attccatgggaaaccttgtcatctgccaagaggtggagagtggctgggaaaaactgaacc 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 attccatgggaaaccttgtcatctgccaagaggtggagagtggctgggaaaaactgaacc 385
Query: 365 atctattatgtgatacctagaagtcaggaggctgccccctgaggagccaagcagccaggg 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 atctattatgtgatacctagaagtcaggaggctgccccctgaggagccaagcagccaggg 325
Query: 425 atggtggtgggaaacagaggtctctcatgccattctgtcaatgaggggactgctgctcct 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 atggtggtgggaaacagaggtctctcatgccattctgtcaatgaggggactgctgctcct 265
Query: 485 gacaggactgtaaggaagagagggtcaaaaaagaatggtaccaaggagagagtggggtgg 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 gacaggactgtaaggaagagagggtcaaaaaagaatggtaccaaggagagagtggggtgg 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 544
Length of database: 944
Length adjustment: 10
Effective length of query: 534
Effective length of database: 934
Effective search space: 498756
Effective search space used: 498756
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no178_h02.g1 MSMg01no178_h02.g1 CHROMAT_FILE:
MSMg01no178_h02.g1 PHD_FILE: MSMg01no178_h02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:51:15 2005
(497 letters)
>mm_chr5_141884459_141885355
Length = 897
Score = 766 bits (396), Expect = 0.0
Identities = 472/498 (94%), Gaps = 4/498 (0%)
Strand = Plus / Plus
Query: 1 tctctctttcacatacacacatacacacacacacacacacacacacacatacacacacac 60
|||||||||||| ||||||| ||||||||||||||||||||||||||| ||||||||||
Sbjct: 203 tctctctttcac--acacacacacacacacacacacacacacacacacacacacacacac 260
Query: 61 acaactgtgaaatggggtatccttgtgatactgataagttcacaataagagtggttcatg 120
||||||||||| |||||||||||||||||||||||||||||||| ||||||| |||||||
Sbjct: 261 acaactgtgaagtggggtatccttgtgatactgataagttcacagtaagagtagttcatg 320
Query: 121 cttcctgttcctcctttgttgacacctagagatctcctcactgccatcctcttgacttgg 180
||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 321 cttcccattcctcctttgttgacacctagagatctcctcactgccatcttcttgacttgg 380
Query: 181 aaaggaaggtcacccctctccacacacccgccattatctgcgctggtagggaggcatcac 240
|||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 381 aaaggaaggtcaccactctccacacacccgccattatctgcgctggtagggagacatcac 440
Query: 241 tgttgcaggatactggtgaagctctcatataaggctccattgatggtgagggagaaaggt 300
||||||||||| |||||||| |||||||||||||||||||||||| |||||||||||||
Sbjct: 441 tgttgcaggatcctggtgaaattctcatataaggctccattgatggggagggagaaaggt 500
Query: 301 gcctcatgcctacagggaggcagtgaagacaaaggctgtcaccgacccagagtagagaga 360
||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||
Sbjct: 501 gcctcatgcctacagggaggcagtgaagacaaaggctgtcagtgacccagagtggagaga 560
Query: 361 ggcaggtggtgtgatgtaaataactgtgtggtagtgagggtgaggc-acctctgctttct 419
|||||||||| |||||||||||||||||||||||||||||||||| || ||||||||||
Sbjct: 561 ggcaggtggtatgatgtaaataactgtgtggtagtgagggtgaggagac-tctgctttct 619
Query: 420 ctcacaccactccagtgggtagaagagcatagtgatccagcagagaaagggagggggtgt 479
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 ctcacaccactccagggggtagaagagcatagtgatccagcagagaaagggagggggtgt 679
Query: 480 ggtccttcattttgcttt 497
|| ||| |||||||||||
Sbjct: 680 gggcctccattttgcttt 697
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 43
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 497
Length of database: 897
Length adjustment: 10
Effective length of query: 487
Effective length of database: 887
Effective search space: 431969
Effective search space used: 431969
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
