Query= MSMg01no179_f07.b1 MSMg01no179_f07.b1 CHROMAT_FILE:
MSMg01no179_f07.b1 PHD_FILE: MSMg01no179_f07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:52:19 2005
(274 letters)
>mm_chr5_93353831_93354503
Length = 673
Score = 484 bits (250), Expect = e-141
Identities = 265/270 (98%), Gaps = 1/270 (0%)
Strand = Plus / Plus
Query: 3 ggaattcggtcctttgctgcttcctgcccactctccagataatggctcagaggggccccc 62
|||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 203 ggaattcggtccccagctgcttcctgcccactctccagataatggctcagagggg-cccc 261
Query: 63 gtgagttgatgcttccaaagctgcagcggcgagcactcagggttcacaaacggtgggagg 122
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 262 gtgagttgatgcttccaaagctgcagcggcaagcactcagggttcacaaacggtgggagg 321
Query: 123 agttcctgcttttacttctgatgcatcctccaggacaggttccccaggcgtccctcctcc 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 agttcctgcttttacttctgatgcatcctccaggacaggttccccaggcgtccctcctcc 381
Query: 183 tgctgcctggcatttcaaagcgatgtactggcttttcccaggaaaagtactaagggccac 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 tgctgcctggcatttcaaagcgatgtactggcttttcccaggaaaagtactaagggccac 441
Query: 243 cctttcttcttggtccatttacataggtga 272
||||||||||||||||||||||||||||||
Sbjct: 442 cctttcttcttggtccatttacataggtga 471
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 274
Length of database: 673
Length adjustment: 9
Effective length of query: 265
Effective length of database: 664
Effective search space: 175960
Effective search space used: 175960
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no179_f07.g1 MSMg01no179_f07.g1 CHROMAT_FILE:
MSMg01no179_f07.g1 PHD_FILE: MSMg01no179_f07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:52:19 2005
(234 letters)
>mm_chr5_93502860_93503492
Length = 633
Score = 397 bits (205), Expect = e-115
Identities = 226/233 (96%), Gaps = 1/233 (0%)
Strand = Plus / Minus
Query: 1 cttattaagccaccacacttggctaccacatcttcaaagttatgagtgttatactaggtg 60
||||| || ||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 432 cttatgaaaccaccacacttggctaccacatcttcaaagttatgagcgttatactaggtg 373
Query: 61 aagcctattcctttgcaatgggattcagtgaaccagggaatttaaaattgggccagtgca 120
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 aagcctattcc-ttgcaatgggattcagtgaaccagggaatttaaaattgggccagtgca 314
Query: 121 aagccctaatcatgtactctttgttgtgactggacctcatgacctggtcaatataaaccc 180
|||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||
Sbjct: 313 aagccctaatcatgtactctttgttgtgactggagctcatgacctggccaatataaaccc 254
Query: 181 tggccactatgtcttccaaaggcatcccacctacttgtcttgaccatagaata 233
|||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 tggccactgtgtcttccaaaggcatcccacctacttgtcttgaccatagaata 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 234
Length of database: 633
Length adjustment: 9
Effective length of query: 225
Effective length of database: 624
Effective search space: 140400
Effective search space used: 140400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
