Query= MSMg01no179_f08.b1 MSMg01no179_f08.b1 CHROMAT_FILE:
MSMg01no179_f08.b1 PHD_FILE: MSMg01no179_f08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:52:19 2005
(322 letters)
>mm_chr5_128702374_128703095
Length = 722
Score = 518 bits (268), Expect = e-151
Identities = 311/338 (92%), Gaps = 20/338 (5%)
Strand = Plus / Minus
Query: 5 gaattctacatcttgatcagaaggcaaataggaaaagactggcttctagggagctaggac 64
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 703 gaattctacatcttgctcagaaggcaaataggaaaagactggcttctagggagctaggac 644
Query: 65 gaaagtcttaaagtccatgcacacaatgacacacttcctcc------------------- 105
|||||||||||| |||| ||||||||||||||||||||||
Sbjct: 643 aaaagtcttaaagcccatacacacaatgacacacttcctccaacaaggccacaccttctc 584
Query: 106 -aacaaggccacacctccatatagtgtcactctctgggccaagcatattcaaaacaccac 164
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 583 taacaaggccacacctccatatagtgttactctctgggccaagcatattcaaaacaccac 524
Query: 165 accaggcacatctaagtttttgttgagttggtaaaaactatggcatatattgtataaatc 224
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 523 accaggcacatctaagtttttgttgagttggtaaaaactatggcatacattgtataaatc 464
Query: 225 ctcaaagatagtcagcatatctcacagatgacccattcccttccttcatttcctctcata 284
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 463 ctcaaagatagtcagcatatctcacagatgacccattcccttccttcatttcctctcata 404
Query: 285 attagcttctctggttggaccacacatccttcttgtgg 322
|||||||||||||||||||| |||||||||||||||||
Sbjct: 403 attagcttctctggttggactacacatccttcttgtgg 366
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 322
Length of database: 722
Length adjustment: 9
Effective length of query: 313
Effective length of database: 713
Effective search space: 223169
Effective search space used: 223169
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no179_f08.g1 MSMg01no179_f08.g1 CHROMAT_FILE:
MSMg01no179_f08.g1 PHD_FILE: MSMg01no179_f08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:52:19 2005
(286 letters)
>mm_chr5_128549081_128549766
Length = 686
Score = 538 bits (278), Expect = e-157
Identities = 281/282 (99%)
Strand = Plus / Plus
Query: 1 agagaagattcctccaggccaagtgtagtaatttcttgatgctgacagcacccagggaag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agagaagattcctccaggccaagtgtagtaatttcttgatgctgacagcacccagggaag 260
Query: 61 gaaggaagagacaaagaatgaaaaatcgatgctggtgacattctcctagaacaaccattc 120
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 261 gaaggaagagacaaagaatgaaaaatcaatgctggtgacattctcctagaacaaccattc 320
Query: 121 tggaatgtccctcctgcaccataagacccgattatgttgctgctgtagcacaaagctagc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tggaatgtccctcctgcaccataagacccgattatgttgctgctgtagcacaaagctagc 380
Query: 181 tgaggggatgtttgacttggtgtggtgttgactcaagctgctggaatggtcaagggggga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgaggggatgtttgacttggtgtggtgttgactcaagctgctggaatggtcaagggggga 440
Query: 241 gaatggggatcagagatggatctccttatggcacggatgttg 282
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gaatggggatcagagatggatctccttatggcacggatgttg 482
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 286
Length of database: 686
Length adjustment: 9
Effective length of query: 277
Effective length of database: 677
Effective search space: 187529
Effective search space used: 187529
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
