XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
AAATGGATACCGTGCTCAGCTGTCAGATTTAAGTTCTCACAGTAACCTGC
CATATATGATCACAGTTCTCTAAACTAAAGTTTATATTTTTCCCGTTAAC
TTGACTTGGAGACAGAAGACTCCTTTTCTGAAGTTTTTCAGACTAAAGTT
TGATAATTTAATATAAACTTGGAAGAATTCACACAGAATGGATTATGTTA
TGTGTGGGCCAACTTTCTGCCTAGGGCAGTAGAGGCCACATGGGCACTTA
GCAGAGAACACCCAGTACTGTCTTCAGAGGCACTCAAAATACATCCTGGG
AATTCAAGCAGCTTGCCCCTGTCATCCTCTTGCCAAGCATTTAGAATATT
CTCAACACTAGCCCCCTGGGCTTAGAAACTGCAACTCTAACTTCTCATAT
TTGTTTTTCTTTTCATTTTCAGAAATTCTGCTCATGATGTGTAACTTTTA
ACATCACTAATCAAATGTGCTGTTTTACCAAGTTCCAGCAGATGGTTCTG
CTGGTATTTAAGGAGAAATTGGCAATTGAATCAGAAGTGGACATATATTT
TTTTTTCAAAGAAATCAGGACTGTTTTTAACAACCAAACTTAGTCAGGAT
AAAGGCTTAGTTAAATTCATCAAGCGTGGCATGTAGTGAGTTTCCCAAGG
GCTTAATTACTGTAGTGTTCN

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXATTAAAAAGCACCTTGGGTCCCCAGTGGAG
GAGCTAGAGAAAGAACCCCCGGAGCTGAAGGGGTTTGCAGCTCCGTAGGA
GGAACAACAATATGAATGAACCAGTACTCCCAGAGCCCCCAGGGATTAAA
CCACCAACCAAAGATTACATATGAAGGGACCCATGGCTCCAGTCACATAT
ATAGCAGAGGATGGCCTTATTGATCATCAATGGGAAGAGAGGCCCTTGGT
CCTGTAAGGCTTGATGCCCCAATGTAGGGGAATGCCAGGACCAGGAAGAG
GGAGTGGGTGGGTTGGTGAGCAGGGGGAATAATGAGGGGGCCCCCCCNTT
NTTCTTCTTTCCCCCCCCAAAAAAAAAAAAATAATATTAGATTTTGTGGC
ATTTTGCACCTTTTGCTTTGTTTATCATTCTTCTTCTTCTTTTTTTTCTC
TTCTTTTATCTTGTAAACTCGCAGATTTTTCCTATCTCATTAATTTAAGT
TTTTCACCACACCTTTCTGCTTATTTCGACTTTTTGATTTCCCGTTTTAT
ATATTCCAACATTATATTTAACATATTTTTTAACCGTATCGATATTTCTT
CTTTCTTGAGCTACTGTTATATATTTTGTCCGATATACATGTTTTACACA
ACCTTACCGTTTTGTGTTAGAGAGTCGCGAGTAGTAGCGATCCTCACTAA
TGAGTTCGCCCCGCTTGG

Query= MSMg01no179_h05.b1 MSMg01no179_h05.b1 CHROMAT_FILE:
MSMg01no179_h05.b1 PHD_FILE: MSMg01no179_h05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:52:28 2005
         (677 letters)



>mm_chr5_17669260_17670337
          Length = 1078

 Score =  988 bits (511), Expect = 0.0
 Identities = 535/543 (98%), Gaps = 3/543 (0%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcaaatgg-ataccgtgctcagctgtcagatttaagttctcacagtaacctgcca 62
           ||||||||||||| || | |||||| ||||||||||||||||||||||||||||||||||
Sbjct: 542 ggaattcaaatggaat-ctgtgctccgctgtcagatttaagttctcacagtaacctgcca 484

                                                                       
Query: 63  tatatgatcacagttctctaaactaaagtttatatttttcccgttaacttgacttggaga 122
           |||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 483 tatatgatcatagttctctaaactaaagtttatatttttcccattaacttgacttggaga 424

                                                                       
Query: 123 cagaagactccttttctgaagtttttcagactaaagtttgataatttaatataaacttgg 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 423 cagaagactccttttctgaagtttttcagactaaagtttgataatttaatataaacttgg 364

                                                                       
Query: 183 aagaattcacacagaatggattatgttatgtgtgggccaactttctgcctagggcagtag 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 aagaattcacacagaatggattatgttatgtgtgggccaactttctgcctagggcagtag 304

                                                                       
Query: 243 aggccacatgggcacttagcagagaacacccagtactgtcttcagaggcactcaaaatac 302
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303 aggccacatgggcacttagcagagaacacccagtactgtcttcagaggcactcaaaatac 244

                                                                       
Query: 303 atcct-gggaattcaagcagcttgcccctgtcatcctcttgccaagcatttagaatattc 361
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 243 atcctggggaattcaagcagcttgcccctgtcatcctcttgccaagcatttagaatattc 184

                                                                       
Query: 362 tcaacactagccccctgggcttagaaactgcaactctaacttctcatatttgtttttctt 421
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 183 tcaacactagccccctgggcttagaaactgcaactctaacttttcatatttgtttttctt 124

                                                                       
Query: 422 ttcattttcagaaattctgctcatgatgtgtaacttttaacatcactaatcaaatgtgct 481
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 123 ttcattttcagaaattctgctcatgatgtgtaacttttaacatcactaatcaaatgtgct 64

                                                                       
Query: 482 gttttaccaagttccagcagatggttctgctggtatttaaggagaaattggcaattgaat 541
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 63  gttttaccaagttccagcagatggttctgctggtatttaaggagaaattggcaattgaat 4

              
Query: 542 cag 544
           |||
Sbjct: 3   cag 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 677
Length of database: 1078
Length adjustment: 10
Effective length of query: 667
Effective length of database: 1068
Effective search space:   712356
Effective search space used:   712356
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)