XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCC
TGAGTGTATCTCTCCACCTTAGATCATAGCACCAGACGTTATCGCTATCA
AACTCATCCCTTACTTGCTTCCAGAATTTATCAAAATTATAAGTTAAATA
GCCCAGTAGGTTGATAGCAATGTCCTTTGCAATGTCCTTTGCTGCAACTA
GACATTGTGGTAGATTCTATATTTACTTAAACTGAAGAATATCAGTTACT
TTGCAGTTTGTTCTTTGATATGTTCAAGAAAAAACATTGGCTGCCAGTAT
CACTTTCTTCCTAAGGGGGTTGCCATGACTCCTTTCAAGCATTTTGTATT
TTGGTGTTGTAACCAAAATAGGTTTATATTTTTTGATAGTTAACTTGATC
AAGTTGTCCTTATGAGATACAACACATTAACTTTGATTAAATTGATTTGA
ATGCTATTCTTCAAACTGTAAGCTTTGTTTTAAAATATGGAAATAAAAAA
GGAAGGAGTTTTTCCTAACTGCTATTAACTCCATTTTAAGTATAGCAAAA
CAGGAGAATGTCTCAAATTACCCTTCAAAAATGTTGAAGATTCCTGATGA
ATGTTTATATAATCTGTGAGGACTGTCTATAGCCATCCAAGTGAAAAAAA
TGTAACAAAGGTTAATAGTTTTATCAAACAGCTTCTACATGTTAAAGGCA
AACATGGACCATATGAGGAAAAC

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXAAATGAATTAAACAAGAAGTACTGACAACTT
ATTTTTTTCCTTATGTACCATCTTTATTTTTTTCATTTAACCTTTTTCTA
CAGTCCACCTTTAATCTTCCCCCACCCGTCCACCTTCTGACTGTTCCACA
CCCAATACCTCCTCCTCCCATCTCCATAAGGATATCCCCACCCTGTCAAA
CCACAGCCCGGCGCCCTCCCCACTCTCTGGGCTCTCCATTCTCTTGAGGG
TTAGGTGCATCTTCTCTGACTGAGTTCAAACCTGGCAGTCCTTAGCTGTG
TATGTGTTGAGGGCCTCATATCAGCTAATGCATGATGCCTGGTTGGTGGC
TCAGTTCTGAGAGAACTCAGGGGTCCAGGTTGTTGAGACTGTTGGTCTTC
CCATGGTGCTACCCTCCGCCTCAGCTTCTTCTAGGCTTTCCTTAATTCAA
CCATAGGGGTTCCTGGCTTCTGTCCATTGGTTGGGTGTAAGTATCTGCAT
CTGACTCTTTCATCTGTTTATTGGGCCACTTGAAGGGCAGCCATGCTAGG
CTCCAGTCTGTAAGCACACATATCATCAGTAATAGTGCCAAGCCTTGGAG
CCTCCCCTTAAGCTGGATCCAAATTTGGGTCGGTCACTGGGCATCCTTTC
CCTCAGTCTCTTTTCCATTTG

Query= MSMg01no180_h02.b1 MSMg01no180_h02.b1 CHROMAT_FILE:
MSMg01no180_h02.b1 PHD_FILE: MSMg01no180_h02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:53:41 2005
         (682 letters)



>mm_chr5_12834334_12835414
          Length = 1081

 Score = 1093 bits (565), Expect = 0.0
 Identities = 645/679 (94%), Gaps = 15/679 (2%)
 Strand = Plus / Minus

                                                                        
Query: 5    gaattcctgagtgtatctctccaccttagatcatagcaccagacgttatcgctatcaaac 64
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1004 gaattcctgagtgtatctctccaccttagatcatagcaccagacgttatcgctatcaaac 945

                                                                        
Query: 65   tcatcccttacttgcttccagaatttatcaaaattataagttaaatagcccagtaggttg 124
            |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 944  tcatcccttacttgcttccagaatttatcaaaattataagttaaatagcccaataggttg 885

                                                                        
Query: 125  atagcaatgtcctttgcaatgtcctttgctgcaactagacattgtggtagattctatatt 184
            |||            |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 884  ata------------gcaatgtcctttgctgcaactagacattgtggtagattctatatt 837

                                                                        
Query: 185  tacttaaactgaagaatatcagttactttgcagtttgttctttgatatgttcaagaaaaa 244
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 836  tacttaaactgaagaatatcagttactttgcagtttgttctttgatatgttcaagaaaaa 777

                                                                        
Query: 245  acattggctgccagtatcactttcttcctaagggggttgccatgactcctttcaagcatt 304
            |||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||
Sbjct: 776  acattggctgccagtatcactttcttcctaagagggttggcatgactcctttcaagcatt 717

                                                                        
Query: 305  ttgtattttggtgttgtaaccaaaataggtttatattttttgatagttaacttgatcaag 364
            ||||||||||| |||||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct: 716  ttgtattttggggttgtaaccaaaataggtttatatttcttgatagttaaattgatcaag 657

                                                                        
Query: 365  ttgtccttatgagat-acaacacattaactttgattaaattgatttgaatgctattcttc 423
            |  |||||| ||| | |||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 656  tcatccttaagag-tcacaacacattaattttgattaaattgatttgaatgctattcttc 598

                                                                        
Query: 424  aaactgtaagctttgttttaaaatatggaaataaaaaaggaaggagtttttcctaactgc 483
            ||||||||||||||||||||||||||||||||||| ||| |||||| |||||||||||||
Sbjct: 597  aaactgtaagctttgttttaaaatatggaaataaagaagcaaggagcttttcctaactgc 538

                                                                        
Query: 484  tattaactccattttaagtatagcaaaacaggagaatgtctcaaattacccttcaaaaat 543
            || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 537  tactaactccattttaagtatagcaaaacaggagaatgtctcaaattacccttcaaaaat 478

                                                                        
Query: 544  gttgaagattcctgatgaatgtttatataatctgtgaggactgtctatagccatccaagt 603
            |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 477  gttgaagattcctgataaatgtttatataatctgtgaggactgtctatagccatccaagt 418

                                                                        
Query: 604  gaaaaaaatgtaacaaaggttaatagttttatcaaacagcttctacatgttaaaggcaaa 663
            | |||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||
Sbjct: 417  g-aaaaaatgtaacaaaggttaatagttttatcaaacagcttctgcatgttaaaggccaa 359

                               
Query: 664  catggaccatatgaggaaa 682
            |||||||| ||||| ||||
Sbjct: 358  catggaccctatgaagaaa 340


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 682
Length of database: 1081
Length adjustment: 10
Effective length of query: 672
Effective length of database: 1071
Effective search space:   719712
Effective search space used:   719712
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)