Query= MSMg01no180_m02.b1 MSMg01no180_m02.b1 CHROMAT_FILE:
MSMg01no180_m02.b1 PHD_FILE: MSMg01no180_m02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:54:05 2005
(289 letters)
>mm_chr5_90121157_90121845
Length = 689
Score = 499 bits (258), Expect = e-146
Identities = 279/288 (96%), Gaps = 7/288 (2%)
Strand = Plus / Plus
Query: 5 gaattcttgattctagatattcattatatattataaataacatgtttgtgcaataggcaa 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcttgattctagatattcattatatattataaataacatgtttgtgcaataggcaa 264
Query: 65 gtataaatataaagacatctttaaatcaaattacagaattggtaataccctaattctaca 124
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gtataaatataaagacatctctaaatcaaattacagaattggtaataccctaattctaca 324
Query: 125 gttcttgaagatggcatttgggtaatttgaaagcttcagaaagaactcattgataataca 184
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 cttcttgaagatggcatttgggtaatttgaaagcttcagaaagaactcattgataataca 384
Query: 185 cttataccccaaacactgccaaaggaagttccccatacagaaggcaaataatagtggctt 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 cttataccccaaacactgccaaaggaagttccccatacagaaggcaaataatagtggctt 444
Query: 245 aaaagatacatcaaggaggctaa-ca-g-tgnnntaaatataaaaata 289
||||||||||||||||||||||| || | | ||||||||||||||
Sbjct: 445 aaaagatacatcaaggaggctaagcaagct----taaatataaaaata 488
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 289
Length of database: 689
Length adjustment: 9
Effective length of query: 280
Effective length of database: 680
Effective search space: 190400
Effective search space used: 190400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no180_m02.g1 MSMg01no180_m02.g1 CHROMAT_FILE:
MSMg01no180_m02.g1 PHD_FILE: MSMg01no180_m02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:54:05 2005
(635 letters)
>mm_chr5_90157182_90158220
Length = 1039
Score = 1149 bits (594), Expect = 0.0
Identities = 624/636 (98%), Gaps = 4/636 (0%)
Strand = Plus / Minus
Query: 4 actgattacaatgtttcaagaaaagagggactttaaaattaatgataactgaaaaaaaaa 63
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 839 actgcttacaatgtttcaagaaaagagggactttaaaattaatgataactgaaaaaaaaa 780
Query: 64 t----ctgacacgcaatgacttttcattaaactcaatttatggtttggatattgaagtga 119
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 779 tctaactgacacgcaatgacttttcattaaactcaatttatggtttggatattgaagtga 720
Query: 120 cttttaaatttttgtttgctaaatgagtataaaaaccaaaccatgcaagcattattgtat 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 719 cttttaaatttttgtttgctaaatgagtataaaaaccaaaccatgcaagcattattgtat 660
Query: 180 ttgccacttcaatgagagaatctctatgtaaagatgctgtccattataccttgaaggtgg 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 659 ttgccacttcaatgagagaatctctatgtaaagatgctgtccattataccttgaaggtgg 600
Query: 240 gtagtaacagtgaaacaaatgcaaacacagactgttcacagttaaaactttggggatggg 299
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 599 gtagtaacagtgaaacaaatgcaaacacggactgttcacagttaaaactttggggatggg 540
Query: 300 ggacttggacagtcatattcattaaagggaagcagagtatattttttaaagcagaaattc 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 539 ggacttggacagtcatattcattaaagggaagcagagtatattttttaaagcagaaattc 480
Query: 360 ttttatgcaactatagaattgacatcatatgttggcctacatacaggttttgaactatca 419
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 479 ttttatgcaactgtagaattgacatcatatgttggcctacatacaggttttgaactatcg 420
Query: 420 ttatacagtttccctgctggtaatagcatttcacagtagtatgtgatatctcggtacaat 479
|||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct: 419 ttatacagtttccctgctggtaatggcatttcacagtagtatgtgatatcttggtacaat 360
Query: 480 agcaccctcatacatttggagactggcactataccttattaggaatgacactttccctat 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 359 agcaccctcatacatttggagactggcactataccttattaggaatgacactttccctat 300
Query: 540 gaaaaacaagatgtttgtggaaagatcactatctggtaatactaacggcttcatgtgaca 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 299 gaaaaacaagatgtttgtggaaagatcactatctggtaatactaacggcttcatgtgaca 240
Query: 600 aagttgactttcttccaactctgatgttagcagggg 635
|||||||||||| ||| |||||||||||||||||||
Sbjct: 239 aagttgactttcctccgactctgatgttagcagggg 204
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 635
Length of database: 1039
Length adjustment: 10
Effective length of query: 625
Effective length of database: 1029
Effective search space: 643125
Effective search space used: 643125
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
