BAC Information

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BAC

Clone NameMSMg01-181A24
Chromosome5 (Build37)
Map Location 151,703,744 - 151,704,047
singlet/doubletsinglet
Overlap geneLOC100040180
Upstream geneLOC100040089, Rxfp2, LOC667470, Fry, LOC100042068, Gm5, XM_359419, Brca2, B230342M21Rik, BC037393, Aprin
Downstream geneKl, LOC667510, Stard13, LOC630708, LOC625175, LOC100042166, EG435877, EG632649, EG632671, Rfc3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-181A24.T7 (MSMg01no181_a24.b1)MSMg01-181A24.TJ (MSMg01no181_a24.g1)
ACCAG374358AG374359
length743736
length of high quality
(start - end)		363 (30 - 392)304 (66 - 369)
definitionCHROMAT_FILE: MSMg01no181_a24.b1 PHD_FILE: MSMg01no181_a24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:54:27 2005CHROMAT_FILE: MSMg01no181_a24.g1 PHD_FILE: MSMg01no181_a24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:54:27 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTACAGAATCCGCGGAATTCTC
TCTGTATTCTCCGCTAGCCCTGAACTCAAAGAGATAAGCCTGTCTCTGCC
TCATGTGTGCTAAGATTGAAGATGTGAACTACCATACCCAGCAGAGGTTT
TTCTCGAGACAGGAATTTCTCTGTGTAGCTCTGACTATTCTAGTACTTAA
TTCTGTTGACTAGGGTAGCCTTGAACTCAAAGAGTTGCTATTTTGTGACT
TCTTTTTTCCACCCTTCTCCCCTCCCCCACCTCAAATTCAGTCTTGTATC
TCTGGATAGGAGAGACAAAAGGATAGAGGGGGAGAGAGAGATCAAAATCC
CTGAGTCTAATTTCATTCCCTTCATTTCTTCTTTGAGCACAACTACTAAN
AAGNNCCATTACAAACCCCCTCTCCCCGAATAACAGCTGCCATTAACCAT
ACCCCCTTCTCCCCAGGGCTCTAACATTTATATACCCTCTGAAAAGCTCC
CAGAATTTCCAACATCCAACAATCGAAGACACTGGTTGCAGGTGACAGAA
CTATGCCTCAGCTGCTGTGGACAGCCTGAAGCGGCTCCCATAGTCCCACA
TCTGGGATTAAAATGAAAACACATTCCTATAATATTTCTGTCTTTTTATA
GAAACTCCAATTTCCAAATTGTCACTGCTTCTGCCCCCATAGTTGTTTCG
CTAATGGTTTACTATACTATTGCTTAATGTAAGAGTTCACTAG

AGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXTTGCCCAATTCACTTTGTAGACCAGGCGTGGCCACAAACTCAC
AGAGATCCACCTGCCTCTGCCTCCCAGGGTGCTGGGATTAAAGGCACATA
CCATCAAGCCTGGCTTCCGATATGATCTTTTCTTGGCAGCAGGAGTGTTT
CCCACCCCAGAGTTGAAGCTGCTGAGTGGGAACTCTTACAACACTTGAAT
GTCTGGTGCCTTAGCTAGTCAACCAACCTGTGTCAGAGAGACTCGGGTTG
TTTGGTTTGGTTTTGTATCCATGTGGACCAAGTGGTTCAGGGGAGAGGGG
CCCCAGCTTCTGTTCTGTGAACGCCACCAAGGCACGTTTAAGCCAATTCT
GGCAATCCCTGACCCCCTTCCATTGTGCCAGGATTTGTCTATCCTCTACC
AAACCGAAAAGTAATCCCCCAGGGAGTGTGTTAATATATTTTGGTGACAG
GACTTAGTGACAAAGAAGTGACTGCCCTCCCTTGACGAACCTATGGACCA
ATACACCAATGGATTGTGAGTACCTAAAGCAGTGCCTTTGTCGGAAGTGA
GCTTCCTCCTGCTAGCTTCTTCCTCCTGCTAGCTTCTTCCGTGGTGCTGT
ATGACACTCTGACTATTCCTGTGCCCTGTAAAGAAGACCTGTTCACTGGC
ACTGAGGCCCCTGAATCATAATGATGGCGGCTTCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no181_a24.g1 MSMg01no181_a24.g1 CHROMAT_FILE:
MSMg01no181_a24.g1 PHD_FILE: MSMg01no181_a24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:54:27 2005
         (304 letters)



>mm_chr5_151703444_151704147
          Length = 704

 Score =  572 bits (296), Expect = e-168
 Identities = 302/304 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttcactttgtagaccaggcgtggccacaaactcacagagatccacctgcctctgcctccc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 604 ttcactttgtagaccaggcgtggccacaaactcacagagatccacctgcctctgcctccc 545

                                                                       
Query: 61  agggtgctgggattaaaggcacataccatcaagcctggcttccgatatgatcttttcttg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 544 agggtgctgggattaaaggcacataccatcaagcctggcttccgatatgatcttttcttg 485

                                                                       
Query: 121 gcagcaggagtgtttcccaccccagagttgaagctgctgagtgggaactcttacaacact 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 484 gcagcaggagtgtttcccaccccagagttgaagctgctgagtgggaactcttacaacact 425

                                                                       
Query: 181 tgaatgtctggtgccttagctagtcaaccaacctgtgtcagagagactcgggttgtttgg 240
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 424 tgaatgtctggtgccttagctattcaaccaacctgtgtcagagagactcgggttgtttgg 365

                                                                       
Query: 241 tttggttttgtatccatgtggaccaagtggttcaggggagaggggccccagcttctgttc 300
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 tttggttttgtatccacgtggaccaagtggttcaggggagaggggccccagcttctgttc 305

               
Query: 301 tgtg 304
           ||||
Sbjct: 304 tgtg 301


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 304
Length of database: 704
Length adjustment: 9
Effective length of query: 295
Effective length of database: 695
Effective search space:   205025
Effective search space used:   205025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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