BAC Information

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BAC

Clone NameMSMg01-181E16
Chromosome5 (Build37)
Map Location 87,202,654 - 87,203,131
singlet/doubletsinglet
Overlap genenone
Upstream geneCenpc1, LOC100039521, AI586015, Ube1l2, Gnrhr, Tmprss11c, Tmprss11d, Tmprss11a, 9930032O22Rik, Tmprss11f, Tmprss11b, Tmprss11e
Downstream geneA730098D12Rik, LOC622056, Ugt2b34, Ugt2b1, LOC665424, LOC545767, Ugt2b35, Ugt2b36, LOC665440, Ugt2b5, LOC435848, Ugt2b37, LOC665468, Ugt2a3, LOC665476, LOC665483, LOC665494, LOC100039818, Ugt2b38, Ugt2a2, Ugt2a1, Sult1b1, Sult1d1, Sult1e1, Csn1s1, Csn2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-181E16.T7 (MSMg01no181_e16.b1)MSMg01-181E16.TJ (MSMg01no181_e16.g1)
ACCAG374512AG374513
length723729
length of high quality
(start - end)
682 (42 - 723)289 (71 - 359)
definitionCHROMAT_FILE: MSMg01no181_e16.b1 PHD_FILE: MSMg01no181_e16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:54:44 2005CHROMAT_FILE: MSMg01no181_e16.g1 PHD_FILE: MSMg01no181_e16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:54:44 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CTCATCACTGTGCAAGGGAGCTTAAATGGGCAAATTGTGTTGGTGAGCAG
CTTGGCAATCACTTCTGAAGTTAAGGATTCACAAACCCCACTTGCACTTG
GTTATCTCAATATATTCCTATGAAGGGCATTGCTTTTTTCACTTGCTTTA
TTGACTTTTATTGTGTCTATATACTGTTATGTAGAGCATGCAAAATTACT
GATTTGTTGAGGTTGCTTATAGTTATGTTTCATAACTAGAAAGTGAATTT
TAAAAATCAATCATACACAGAAACAGATTCAGAGACCCACAGCCAAACAT
TAGGCAGAATTCGGGATGAAGGATTATAGGAGCCAGAGAGGTTGAGGACA
CCACAAGGAAACCTACAGAGTCAACTAACCTGGGCCCTTAGGGACCTACA
GAAACTGAACAGCTAACCAGAGATTCTGCACGGGACTAACCTAGGCCCTC
TGCATATATGTTTATAGTACTGAGCAGAGCAACTTATTTACTATTAATTA
TTATTATTATTATTATTATTATTATTATATTTGCAAGACAGGGTTTCTCT
GTATAACTCACTCTGTAGATCAGGCTGGCCTCAAACTAAGAGATCTGCCT
GCCTCTTCCTCCTGAGTGCTGGGATTAAAGGCATGCACTACCACCACCAG
GCTCTTGTAAGAGAACTCTGAAG
GCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTTAACTGAGGAATACTGAAGGGCTAAGAAG
CACCTGAGAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAAATCAA
AACAACCTTGAGATTCCACCTCACACCAGTCAGAATGGCCAAGATCAAAA
ATTCAGGGGACAGCAGATGCTGGCGAGGATGTGGAGAAAGAGGGACACTC
CTCCACTGCTGGTGGGATTGCAAGCTGGTACAACCACTCTGGAAATCAGT
CTGGCTGTTCCTCAGAAACGTTGACATAGTACTACCAGAAGATCCAGCAA
TACCTCTCCTGTTTATATACACCCCACACGTTCCAACTTGTAATCAGGAC
ACATACTCCACTATGTTCACAGCAGCCTTTTTTATAATAGCCAGAAGCTG
GAAAGAACCCAGATGCCCCTCAACAGAGGAATGGCAACACAAAAAAAAAA
AAAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG
AAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAAGAAAGAAAA
GAAAAGAAAAGAAAAGAAAAGAAAAGAATAGAAAAGAATAGAATAGAAAA
GAAAAGAAAAGACAAGAAAAGAACAGAAAAGACATGTGGAACTTTTACAC
ATTGGAGTACTACTCAGCAATTAAAAAGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no181_e16.b1 MSMg01no181_e16.b1 CHROMAT_FILE:
MSMg01no181_e16.b1 PHD_FILE: MSMg01no181_e16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:54:44 2005
         (682 letters)



>mm_chr5_87202654_87203735
          Length = 1082

 Score =  901 bits (466), Expect = 0.0
 Identities = 475/478 (99%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattctcatcactgtgcaagggagcttaaatgggcaaattgtgttggtgagcagcttg 63
           |||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||
Sbjct: 478 ggaattctcatcactgtggaagggagcttaaatgagcaaattgtgttggtgagcagcttg 419

                                                                       
Query: 64  gcaatcacttctgaagttaaggattcacaaaccccacttgcacttggttatctcaatata 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 gcaatcacttctgaagttaaggattcacaaaccccacttgcacttggttatctcaatata 359

                                                                       
Query: 124 ttcctatgaagggcattgcttttttcacttgctttattgacttttattgtgtctatatac 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 ttcctatgaagggcattgcttttttcacttgctttattgacttttattgtgtctatatac 299

                                                                       
Query: 184 tgttatgtagagcatgcaaaattactgatttgttgaggttgcttatagttatgtttcata 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 298 tgttatgtagagcatgcaaaattactgatttgttgaggttgcttatagttatgtttcata 239

                                                                       
Query: 244 actagaaagtgaattttaaaaatcaatcatacacagaaacagattcagagacccacagcc 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 238 actagaaagtgaattttaaaaatcaatcatacacagaaacagattcagagacccacagcc 179

                                                                       
Query: 304 aaacattaggcagaattcgggatgaaggattataggagccagagaggttgaggacaccac 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 178 aaacattaggcagaattcgggatgaaggattataggagccagagaggttgaggacaccac 119

                                                                       
Query: 364 aaggaaacctacagagtcaactaacctgggcccttagggacctacagaaactgaacagct 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118 aaggaaacctacagagtcaactaacctgggcccttagggacctacagaaactgaacagct 59

                                                                     
Query: 424 aaccagagattctgcacgggactaacctaggccctctgcatatatgtttatagtactg 481
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 58  aaccagagattctgcatgggactaacctaggccctctgcatatatgtttatagtactg 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 682
Length of database: 1082
Length adjustment: 10
Effective length of query: 672
Effective length of database: 1072
Effective search space:   720384
Effective search space used:   720384
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)