BAC Information

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BAC

Clone NameMSMg01-181F10
Chromosome5 (Build37)
Map Location 144,208,672 - 144,343,013
singlet/doubletdoublet
Overlap geneLOC670671, Daglb, Rac1, 2810453I06Rik
Upstream geneLOC100038954, LOC100041004, LOC100038972, LOC100038984, LOC100042525, LOC100038888, Zfp469, LOC666788, Fbxl18, D430018E03Rik, LOC100042558, Actb, Fscn1, 2810055G22Rik, LOC667809, Olfr718-ps1, LOC640324, LOC100042605, Rbak, 4933411G11Rik, Spdyb, Zfp12, Zfp316, Gm792, E130309D02Rik, Zdhhc4, Grid2ip, Kdelr2, LOC231869
Downstream genePscd3, Usp42, Eif2ak1, 4921520G13Rik, Jtv1, Pms2, 4930526H21Rik, AU022870, Ocm, Lmtk2, Bhlhb8, 2210010N04Rik, Bri3, Baiap2l1, 4930568B11Rik, Nptx2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-181F10.T7 (MSMg01no181_f10.b1)MSMg01-181F10.TJ (MSMg01no181_f10.g1)
ACCAG374544AG374545
length754763
length of high quality
(start - end)
108 (187 - 294)248 (77 - 324)
definitionCHROMAT_FILE: MSMg01no181_f10.b1 PHD_FILE: MSMg01no181_f10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:54:47 2005CHROMAT_FILE: MSMg01no181_f10.g1 PHD_FILE: MSMg01no181_f10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:54:47 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(144,208,672 - 144,208,779)(144,342,766 - 144,343,013)
sequence
CTCAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCTTATCCCTTTCTCTCTTACATCACT
TGCATCAAGATATTGTCTCTGCCAATGCTACTTGTGTGGATGTCATTACC
TTGGACCAAATGGCTGTATTCTTTAAGGATGTAGGGTCAAAGCTGCTTGC
TCCAACTTGCTTCCCCTGCAAACCTTTTCATGTATACTATTATTCTTGTT
GTAAGCAGAATTGTATTTGTCATAATTTAAGCTATTACATATTATGGCTT
GGCAGCTCCGCACCAAAGCCCTTCTGTTGGAAGTACTCAGCCTTGAATTA
AAGAAGTTTTTTTTTTCCACCCCCCCCCCCCCTCTTTATTTCTCCCACGT
CTTACCCATATCTCCCCCCTCTGAAAAAACTGTTCGCCCCTTTTTTTTGA
ACCCCCCCCTTTTTTACCCGACTAATTTATGTTTGTCCTTGACATTCCAA
TAACTGCAAAACCTTTTCTTCCCGTTTTTCCCCTTTTTTTTTATCCCCTC
CCCTTTTTTTTTTTTCACCATTTTTCCCACCCCCCCCCCCCCCCCCTCCC
CCCTTTTTTCCCCACCCCCCCCCACCCCCCCTTTTTTTTTTTTTAAAAAC
TTATAACTACCACCCATTTTTTTTTTCTTTTTTTTTCCTTCCCCTCCCCC
CTCCTCCCCATTTTATAAATAATAATTTTTTTTATACACTTTTTTTTTAA
TATN
ATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCACTCCTCACAGCGGCTCACAGCGATCCTCCTTTTCTGTTTCTG
CTCCTCTCAGAGCAACGAATCTATCGCCTGCATTTCCCACGTTGGCGCTA
TTTAGCAACTGGCTATTTTTGCTAATCTTTTGGATTAGGCTTTGAACTGC
TAGAGAATCACCGCCTTAAAAAGGAAATGTTTCTGCCTTACAGCTTCTAC
TCTGGTGGAATAGCAATGATCAGTCCAAAAACATAAAAAAATAAAAGTGC
TGTGCAAGTAGCCAGTGGCTTACCTCAAAATGGGTCCCAGCAAGCAGCTA
ATAATAAGTCCTTTTTTTTTCCCCCACCACCCGCCAGGCACGATGGGACC
AAAAGACCCTTCTGCACCTGAAGAATCACAAGACCCAAAAGCTTAACCAG
CTCTTAGCTTACTTTGATCTAGTACAAAGACCATCGCTGATGCATATATC
TCGTATATATGATGCAAAATTGTTACCCTGTCCCTTATAAATACGTTCAA
TTGTATTATTCCCCCCACCAAGGTTATTACTTGCTGGCCCATTGTGCCCC
ATTACTAACAGTGTTTTGTCTATTATTCTTCCATTAGTAATTTATGATCG
TTTTAATTTATTTATTTCCCTCACTCTCCGATCCTTTTTTTTCTTTTTTT
ATTTACTCCCCACTTTTTTTAATTTTTTCTTCTCCCCCCCTCTCTCTTTC
TTCTATCTATTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no181_f10.b1 MSMg01no181_f10.b1 CHROMAT_FILE:
MSMg01no181_f10.b1 PHD_FILE: MSMg01no181_f10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:54:47 2005
         (108 letters)



>mm_chr5_144208472_144208979
          Length = 508

 Score =  186 bits (96), Expect = 4e-52
 Identities = 105/108 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcaaagctgcttgctccaacttgcttcccctgcaaaccttttcatgtatactattattct 60
           |||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcaaagctgctcactccaacttgcttcccctgcaaaccttttcatgtatactattattct 260

                                                           
Query: 61  tgttgtaagcagaattgtatttgtcataatttaagctattacatatta 108
           ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgttggaagcagaattgtatttgtcataatttaagctattacatatta 308


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 4
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 108
Length of database: 508
Length adjustment: 8
Effective length of query: 100
Effective length of database: 500
Effective search space:    50000
Effective search space used:    50000
X1: 6 (11.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 6 (12.4 bits)
S2: 6 (12.3 bits)
Query= MSMg01no181_f10.g1 MSMg01no181_f10.g1 CHROMAT_FILE:
MSMg01no181_f10.g1 PHD_FILE: MSMg01no181_f10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:54:47 2005
         (248 letters)



>mm_chr5_144342566_144343213
          Length = 648

 Score =  464 bits (240), Expect = e-135
 Identities = 246/248 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   agcgatcctccttttctgtttctgctcctctcagagcaacgaatctatcgcctgcatttc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 agcgatcctccttttctgtttctgctcctctcagagcaacgaatctatcgcctgcatttc 389

                                                                       
Query: 61  ccacgttggcgctatttagcaactggctatttttgctaatcttttggattaggctttgaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 ccacgttggcgctatttagcaactggctatttttgctaatcttttggattaggctttgaa 329

                                                                       
Query: 121 ctgctagagaatcaccgccttaaaaaggaaatgtttctgccttacagcttctactctggt 180
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 328 ctgctagagaatcaccgccttaaaaaggaaatgtttctgccttagagcttctactctggt 269

                                                                       
Query: 181 ggaatagcaatgatcagtccaaaaacataaaaaaataaaagtgctgtgcaagtagccagt 240
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 268 ggaatagcaatgatcagtccaaaaaaataaaaaaataaaagtgctgtgcaagtagccagt 209

                   
Query: 241 ggcttacc 248
           ||||||||
Sbjct: 208 ggcttacc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 248
Length of database: 648
Length adjustment: 9
Effective length of query: 239
Effective length of database: 639
Effective search space:   152721
Effective search space used:   152721
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)