BAC Information

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BAC

Clone NameMSMg01-181G21
Chromosome5 (Build37)
Map Location 135,079,488 - 135,080,053
singlet/doubletsinglet
Overlap geneLat2
Upstream geneLOC666038, LOC100039750, Gats, Wbscr16, Gtf2ird2, Ncf1, Gtf2i, LOC630424, Gtf2ird1, LOC100039820, Clip2, EG666071, Gm52, Rfc2
Downstream geneEif4h, LOC638081, Limk1, Eln, Wbscr28, Cldn13, Wbscr27, Cldn4, Cldn3, Abhd11, Stx1a, Wbscr22, Wbscr18, Vps37d, Mlxipl, Tbl2, Bcl7b, LOC100040069, Baz1b, Fzd9, Fkbp6, Trim50, Nsun5, Pom121, Hip1, Ccl26l, Ccl24
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-181G21.T7 (MSMg01no181_g21.b1)MSMg01-181G21.TJ (MSMg01no181_g21.g1)
ACCAG374609AG374610
length755738
length of high quality
(start - end)		226 (41 - 266)569 (62 - 630)
definitionCHROMAT_FILE: MSMg01no181_g21.b1 PHD_FILE: MSMg01no181_g21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:54:53 2005CHROMAT_FILE: MSMg01no181_g21.g1 PHD_FILE: MSMg01no181_g21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:54:53 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
TAGTTCTTCTTACGAGCAGCAAGTGTGTAGAACTGCTGAGCCACATCTCC
AGCCCCAGGCTCTGATTTTTCAAATAGCCTCCCTTAACTCCTTTTTTTTT
TTTTTTTTTTTTTTTTGCTGGTGGTGAATAGAGTCTTGCTCTTTTCTTTC
TTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTCTCTTTTA
TTATTATCTTTTGGTTGGTTAGGTTTGTTTTTCTAGATAGAGTTTCTCTG
TGTAGCCTGGGTTGTCTTATTTTTGATTGTGTAGACCAGTCTGCCCTCCA
ACTCAGAGATCCGCCCACCTTTGCCTCGGGAGTGCTGGGATTAAAGACAT
GCGCCACCACTGCCACCCATCTTGCTCTATTTCTAGGTAGGAAGCACAGG
CTGGCCCTCAAGTTGCTATGCATCCCAGGCTGGCCCCAAACTACCAATCT
TCCTGCTTCTGCCTTCTCAGTGTTATTATTGAAGTGAATACTGTCCTGTT
TGCTCATTCAAGTGGCTTAGCTTTCCTGTCTCTCTTGTCTCTCTCTGGCT
CAGGTTTCCTGTTTCTCTTATAGTGTCTTTTGATTATCCTTTTTTCCTTC
CCGCCCCCGACTTTCTGCTTTCCCTGGCAGGCTTCCCCAATTTTCCATTT
CCATTTTCCCTTTTTCCCCTTATCTTCTTTTTTTCCCCCTTTTTGTCCTC
TCTCN

CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXTCCCAATTCTTTACTTATTGTGCGGGTGTGGAAACACAC
ATGTGGCAGCCTTGGGATGACCTGTGGGAGTCAGTGCTCCCCTTTAACCA
CAAGGGGCCTGGAGCACCTGACCTTTGTTCTTGTTTTGTAAGAATGGGTC
TCCTGCTGGGAGGCAGAGGCAGGAGGATCTCTGTGAGTTTGAGGCCAGCC
TGGTCTACAAAGTGGGTTTCAGGAAAGTTAGGGTTGTTACACAGAGAAAC
CCTGTCTTGAAAAACAAACAAAACAACCCAACAACAAAGAATTTAGCCCC
TGAGGTAGGACACCCAAAGTTGTCTCCTGGCCTCTACCTGTACACCTATA
CCTGCAGTCAGCATACACACAAACAACAACAACAACTGGCCTAAGGGGCT
CAGTAGTTAAGAGCACCTACTGCTCTTCCATTGGTCATGAGTTCAATTCC
CAGCAACCATATGGCAGCTCACAGCTGTCTATAATAGGATCCAGAACTAT
CTTTTTTGTGTGTAGTATGCAGATATACATGTAGACAAAACTTATATACA
TAAAATGCATAAATAAATGTTTTTTTTAAACTGATCTAAGTGAATTTTGA
AGCCCCTGAAGCTCAGGGGGAGAGCCCTGCAGGGGAGGCAGCAGGGGGAA
GGGACATCTGGGGCTTGCCGACAATATCTACCTGCAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no181_g21.g1 MSMg01no181_g21.g1 CHROMAT_FILE:
MSMg01no181_g21.g1 PHD_FILE: MSMg01no181_g21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:54:53 2005
         (569 letters)



>mm_chr5_135079215_135080184
          Length = 970

 Score = 1035 bits (535), Expect = 0.0
 Identities = 558/569 (98%), Gaps = 7/569 (1%)
 Strand = Plus / Minus

                                                                       
Query: 5   aattctttacttattgtgcgggtgtggaaacacacatgtggcagccttgggatgacctgt 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 839 aattctttacttattgtgcgggtgtggaaacacacatgtggcagccttgggatgacctgt 780

                                                                       
Query: 65  gggagtcagtgctcccctttaaccacaaggggcctggagcacctgacctttgttcttgtt 124
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 779 gggagtcagtgctcccctttaaccacgaggggcctggagcacctgacctttgttcttgtt 720

                                                                       
Query: 125 ttgtaagaatgggtctcctgctgggaggcagaggcaggaggatctctgtgagtttgaggc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 719 ttgtaagaatgggtctcctgctgggaggcagaggcaggaggatctctgtgagtttgaggc 660

                                                                       
Query: 185 cagcctggtctacaaagtgggtttcaggaaagttagggttgttacacagagaaaccctgt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 659 cagcctggtctacaaagtgggtttcaggaaagttagggttgttacacagagaaaccctgt 600

                                                                       
Query: 245 cttgaaaaacaaacaaaacaacccaac----aacaaagaatttagcccctgaggtaggac 300
           |||||||||||||||||||||||||||    |||||||||||||||||||||||||||||
Sbjct: 599 cttgaaaaacaaacaaaacaacccaacaacaaacaaagaatttagcccctgaggtaggac 540

                                                                       
Query: 301 acccaaagttgtctcctggcctctacctgtacacctatacctgcagtcagcatacacaca 360
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 539 acccaaagttgtctcctggcctctacctgtacacctatacccgcagtcagcatacacaca 480

                                                                       
Query: 361 aacaacaacaacaactggcctaaggggctcagtagttaagagcacctactgctcttccat 420
              |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 479 ---aacaacaacaactggcctaaggggctcagtagttaagagcacctactgctcttccat 423

                                                                       
Query: 421 tggtcatgagttcaattcccagcaaccatatggcagctcacagctgtctataataggatc 480
            || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 aggccatgagttcaattcccagcaaccatatggcagctcacagctgtctataataggatc 363

                                                                       
Query: 481 cagaactatcttttttgtgtgtagtatgcagatatacatgtagacaaaacttatatacat 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 cagaactatcttttttgtgtgtagtatgcagatatacatgtagacaaaacttatatacat 303

                                        
Query: 541 aaaatgcataaataaatgttttttttaaa 569
           |||||||||||||||||||||||||||||
Sbjct: 302 aaaatgcataaataaatgttttttttaaa 274


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 569
Length of database: 970
Length adjustment: 10
Effective length of query: 559
Effective length of database: 960
Effective search space:   536640
Effective search space used:   536640
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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