BAC Information

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BAC

Clone NameMSMg01-181K20
Chromosome5 (Build37)
Map Location 63,101,453 - 63,101,744
singlet/doubletsinglet
Overlap geneCentd1
Upstream geneLOC100041524, G6pd2, LOC100041543
Downstream gene3110047P20Rik, LOC100042133
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-181K20.T7 (MSMg01no181_k20.b1)MSMg01-181K20.TJ (MSMg01no181_k20.g1)
ACCAG374782AG374783
length742741
length of high quality
(start - end)
703 (40 - 742)292 (68 - 359)
definitionCHROMAT_FILE: MSMg01no181_k20.b1 PHD_FILE: MSMg01no181_k20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:55:12 2005CHROMAT_FILE: MSMg01no181_k20.g1 PHD_FILE: MSMg01no181_k20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:55:12 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCA
AGGCCCATATCTCAATATGATAAAAGCAATCTACAGCAAACCAGTAGCCA
ACATCAAAGTAAATGGAGAGACGCTGGAAGCAATCCCACTAAATCAGGGA
CTAGACAAGGCTGCCCACTTTCTCCCTACCTTTTCAACATAGTACTTGAA
GTATTAGCCAGAGCAATTCGACAACAAAAGGAGATCAAGGGGATACAAAT
TGGAAAAGAGGAAGTCAAAATATCACTTTTTGCAGATGATATGATAGCAT
ATATAAGTGACCCTAAAAATTCTACCAGAGAACTCCTAAACCTGATAAAC
AGCTTCGGTGAAGTAGCTGGATATAAAATAAACTCAAACAAGTCAATGGC
CTTTCTCTATACAAAGAATAAACAGGCTGAGAAAGAAATTAGGGAAACAA
CACCCATCTCAATAGTCACAAATAGTATCAAATATCTTGGCGTGACTCTA
ACTAAGAAGGTGAAAGATCTGTATGATAAAAACTTCAAATCTCTGAACAA
AGAAATTAAAGAAGATCTCAGAAGATGGAAAGATCTCCCATGCTCATGGA
TTGGCAGGATCAACATTGTAAAAATGGCTATCTTGCCAAAAGCAATCTAC
AGATTCAATGCAATCCACATCAAAATTCCAACTCAATTCTTCAACGAATT
AGAAGGAGCAATTTGCAAATTCATCTGGAATAACAAAAAACC
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXAAAGTAAGTTAAAATGACAAGAGGAGGGCAAAT
CTAGACCACTAGACACTGTAGAAACTGGGAAGAGAGAACAACTTCCCACT
GTCAGGTGATCTACAGAGGTAGAAGAAGCAGGGCTTTTTTTATAGACAGC
TTATAAATAAGTTTGTTATATGTATGCCGTGGCTGACACCAGACAGTTGG
AATTGTTAAATGTCTAAAATCATTTACACATTGTTACCCAGGTATTCTTT
TACAAAACTTTAATTTCCTAAGATTTATAATAGCTTATGAAAAAAAGCTC
CCTAATGAGATATTTAGCAGCCCGCCCCCGCGCTACCTCTAACCTGTTTG
TCAGTGAAGGAAATCCAAACAACACTGAAAAAAATAGAAAGAAAAGGAAG
AAGAAACTAGCAGGCAGTTCATTAAAAACAAAACAAAAACCTACATGCCC
ATAAATAACAATGATACTTTATTTAACAGATTATAACTTCTCGTAGAGAC
ATGTGGAAAACAAAGAAATGATCAGAAGTATTTTGCAAACTAAATACTTT
GTCAAGTCGACTCCAGGAAGCCACAAGGTACCTAACACCTCATTTATGAT
CTATTATAAGATCTCAGGCAAAACTTGTGATTTTTTTCAACGCTGTAGAG
TTGATTGTATATTCTTTATGTAACAACAATATAAAGACAAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no181_k20.g1 MSMg01no181_k20.g1 CHROMAT_FILE:
MSMg01no181_k20.g1 PHD_FILE: MSMg01no181_k20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:55:12 2005
         (292 letters)



>mm_chr5_63101253_63101944
          Length = 692

 Score =  549 bits (284), Expect = e-161
 Identities = 290/292 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaagtaagttaaaatgacaagaggagggcaaatctagaccactagacactgtagaaactg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaagtaagttaaaatgacaagaggagggcaaatctagaccactagacactgtagaaactg 260

                                                                       
Query: 61  ggaagagagaacaacttcccactgtcaggtgatctacagaggtagaagaagcagggcttt 120
           || |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 261 ggtagagagaacaacttcccactgtcaggcgatctacagaggtagaagaagcagggcttt 320

                                                                       
Query: 121 ttttatagacagcttataaataagtttgttatatgtatgccgtggctgacaccagacagt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttttatagacagcttataaataagtttgttatatgtatgccgtggctgacaccagacagt 380

                                                                       
Query: 181 tggaattgttaaatgtctaaaatcatttacacattgttacccaggtattcttttacaaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tggaattgttaaatgtctaaaatcatttacacattgttacccaggtattcttttacaaaa 440

                                                               
Query: 241 ctttaatttcctaagatttataatagcttatgaaaaaaagctccctaatgag 292
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctttaatttcctaagatttataatagcttatgaaaaaaagctccctaatgag 492


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 292
Length of database: 692
Length adjustment: 9
Effective length of query: 283
Effective length of database: 683
Effective search space:   193289
Effective search space used:   193289
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)