Query= MSMg01no181_l09.b1 MSMg01no181_l09.b1 CHROMAT_FILE:
MSMg01no181_l09.b1 PHD_FILE: MSMg01no181_l09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:55:14 2005
(470 letters)
>mm_chr5_92456375_92457248
Length = 874
Score = 716 bits (370), Expect = 0.0
Identities = 401/414 (96%), Gaps = 6/414 (1%)
Strand = Plus / Plus
Query: 58 gaaagaaaacaaattattactccggcaactgattttatgaccttagaaattatttgctga 117
|||||||||| ||||| ||| |||||||||||||||||||||||||||||||||||||
Sbjct: 258 gaaagaaaac-aattaaaactttggcaactgattttatgaccttagaaattatttgctga 316
Query: 118 ttaaaatttagataaccaaatgccagttgaagt-----gtgcacacctgtaactctagtc 172
||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct: 317 ttaaaatttagataaccaaatgccagttgaagtgtggggtgcacacctgtaactccagtc 376
Query: 173 tgcaacacccagaggcaggagcactgaggcaagctggaggcaacctgggcagcatagtgt 232
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 377 tgcaacacccagaggcaggagcactgaggcaagctggaggcagcctgggcagcatagtgt 436
Query: 233 catcttgtcccaacagcaacaaaagagcacacactgtaaattcctgagagcataaaagag 292
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 catcttgtcccaacagcaacaaaagagcacacactgtaaattcctgagagcataaaagag 496
Query: 293 ccctctctgtcactgccaccatgccatgtgcttcacacagatgacttcattaaacaaggt 352
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 497 ccctctctgtcactgccaccatgccaggtgcttcacacagatgacttcattaaacaaggt 556
Query: 353 cttgctctcatccactgaaatccctcaacaccaataaaaacagaacagattctgtaaata 412
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 cttgctctcatccactgaaatccctcaacaccaataaaaacagaacagattctgtaaata 616
Query: 413 cttttaagttctacagttgattctgaaacttttactatataattcgcttcaagg 466
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 cttttaagttctacagttgattctgaaacttttactatataattcgcttcaagg 670
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 470
Length of database: 874
Length adjustment: 10
Effective length of query: 460
Effective length of database: 864
Effective search space: 397440
Effective search space used: 397440
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no181_l09.g1 MSMg01no181_l09.g1 CHROMAT_FILE:
MSMg01no181_l09.g1 PHD_FILE: MSMg01no181_l09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:55:14 2005
(288 letters)
>mm_chr5_92605314_92606001
Length = 688
Score = 487 bits (252), Expect = e-142
Identities = 274/288 (95%), Gaps = 11/288 (3%)
Strand = Plus / Minus
Query: 1 cactaacactgcaaataaagagaggctacagctaacagctggaggcctgccagaagactc 60
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 654 cactaacactgcaaataaagagaggctacagctaacagctggaggcctgacagaagactc 595
Query: 61 atgcactgggtgggcgctggtctcattaaccaaatccctatgattccatgattactctga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 594 atgcactgggtgggcgctggtctcattaaccaaatccctatgattccatgattactctga 535
Query: 121 agctgaacacgaaatttcggaaacaactaattaggcccagttaaatcttcaaaataactt 180
|||||||||||||||||| ||||||||||||||||||||||||||| |||
Sbjct: 534 agctgaacacgaaatttcagaaacaactaattaggcccagttaaat-----------ctt 486
Query: 181 caaaatatcctaagatatggcttatattatacaaactagccatgttttatatccaaaaat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 caaaatatcctaagatatggcttatattatacaaactagccatgttttatatccaaaaat 426
Query: 241 agtgtatacattatacagtactgatgataatacttaggtaatgaaagt 288
||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 425 agtgtatacataatacagtactgatgataatacttaggtaatgaaagt 378
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 288
Length of database: 688
Length adjustment: 9
Effective length of query: 279
Effective length of database: 679
Effective search space: 189441
Effective search space used: 189441
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
