BAC Information

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BAC

Clone NameMSMg01-181M10
Chromosome5 (Build37)
Map Location 116,957,274 - 116,957,556
singlet/doubletsinglet
Overlap gene1500001A10Rik
Upstream genePxn, Arbp, Gcn1l1, LOC100042199, Rab35, Ccdc64, LOC665032, Cit, Prkab1, LOC545798, Ccdc60, 4930562A09Rik, Hspb8
Downstream geneLOC433943, Gm1684, LOC665073, Suds3, Taok3, Pebp1, LOC100042313, LOC100039359, BC023744, LOC667175, Wsb2, Rfc5, Ksr2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-181M10.T7 (MSMg01no181_m10.b1)MSMg01-181M10.TJ (MSMg01no181_m10.g1)
ACCAG374849AG374850
length732715
length of high quality
(start - end)
---283 (75 - 357)
definitionCHROMAT_FILE: MSMg01no181_m10.b1 PHD_FILE: MSMg01no181_m10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:55:19 2005CHROMAT_FILE: MSMg01no181_m10.g1 PHD_FILE: MSMg01no181_m10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:55:19 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCATGCATTTCGCCACAGACTGGTACATGGGGATCACATGTATCATG
GCCATTGTCCCGGACCTAGACCATGGACGATTCTAAGTGACTCCTCATGA
AGTGAGGATTAAGATTCCTGTTTTAGGCTGAGGATATACAGCTCAGTCGG
TAAAGCCTGAAGCTTGAGTTTGATTCCCAGCACCGATGTTAATGGCAAGT
ACATGGCATAGCTTATGTTCCTAGTGACACGTAGGAATGGGTGGATGCCT
GGTGTTGTCTGAGCATTCTGTCTATATGTAACTGTGTTCTCGAGAGGCTG
CCTCACAATGTAATGAGCATCAGTGTTTGCTATAATATACCTTTAATATC
ATCTCGTGTATGTCAGATGCAAGCACGTGTCTGTCAGCTCTAAGCTGGTC
TGGCCTAGTTAGTGAGGTCTGATGATTTATGGTTACTTCTTTATAGTTTG
TCTGTAATTATTCACCTTTCGGTCTATAGCTTGTGATGAATACTTCTGAT
ATTAGTCTTTGGCTCCTATATGCGTCTTGCATGTCGCATCTTTATATCTG
TTCACCATTCCCTCGTTTCTTGTTTTCTTGATGCACACTTCATACTTGGC
CTTTCTTTTTATGCTTTGCTTCCCTCTTTCCTTTCCTCATTTGGTGGCTT
CATTATTACGCCGTTTTCTCGCTCTCTTTCCC
AATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXAGATCCCCAAGTGCAACATCAATCAA
ATCAGAGAGAACAGCTCCCCAACTCCTTCCCCGGGCAGCTTGGGGGGAAA
ATACATCTTCCTTCTCTCCCCACTTTGATCCTCCTTCCCTCAAAAAAGAG
ACCTGGACTCATGATGCTGTGCCAATAAATGGCTGCTTGAGCAGCAAGTA
AGGAGGGAAGGTGGGCCAGGTCTATTTTTAGCCACCGCTGATATTCTGTG
ACAGCTGTCACTCTCTTATCAAATAAACCTGGGTGTTGCTTGAGTTTGGA
GTGAATGTATGTTAAGGAACACCCCCCCGATTGTTTAAAAGGGTGTTTAG
GGCGAGCACTAAGGACCAAGGCTTGCGGTCACCTTTCACAGAACTCTTAC
AACTCTTTCTAGGAAGGTGTCACCTCTACTCTCTTCACAAGTCTGCCAGA
AAGGCTCTATCATTGGCACCCATTCTGCAGATGAAAACACTGAGGTTTAC
TGCAGCCAAAGCTTCCCAGTTAGTGAGCGGCATGAGATCCAATGCTGACG
AGTTTGACCATGCACCCCAGGCTTCCAGACTCATTTGACTTGTAGACCTC
AAGAGCTGTATTTACACAAAGGGACGGTTGCCTCTTCCAACCTCTCTCTG
GGAATGAGTGATTAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no181_m10.g1 MSMg01no181_m10.g1 CHROMAT_FILE:
MSMg01no181_m10.g1 PHD_FILE: MSMg01no181_m10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:55:19 2005
         (283 letters)



>mm_chr5_116957074_116957756
          Length = 683

 Score =  524 bits (271), Expect = e-153
 Identities = 280/283 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   agatccccaagtgcaacatcaatcaaatcagagagaacagctccccaactccttccccgg 60
           |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
Sbjct: 201 agatccccaagtgcaacatcaatcaaatcatagagaacagctccccaactccttcccccg 260

                                                                       
Query: 61  gcagcttggggggaaaatacatcttccttctctccccactttgatcctccttccctcaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gcagcttggggggaaaatacatcttccttctctccccactttgatcctccttccctcaaa 320

                                                                       
Query: 121 aaagagacctggactcatgatgctgtgccaataaatggctgcttgagcagcaagtaagga 180
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 321 aaagagacctggactcatgatgctgtgccaataaatggctgcttgagtagcaagtaagga 380

                                                                       
Query: 181 gggaaggtgggccaggtctatttttagccaccgctgatattctgtgacagctgtcactct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gggaaggtgggccaggtctatttttagccaccgctgatattctgtgacagctgtcactct 440

                                                      
Query: 241 cttatcaaataaacctgggtgttgcttgagtttggagtgaatg 283
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cttatcaaataaacctgggtgttgcttgagtttggagtgaatg 483


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 283
Length of database: 683
Length adjustment: 9
Effective length of query: 274
Effective length of database: 674
Effective search space:   184676
Effective search space used:   184676
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)