Query= MSMg01no181_n08.b1 MSMg01no181_n08.b1 CHROMAT_FILE:
MSMg01no181_n08.b1 PHD_FILE: MSMg01no181_n08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:55:24 2005
(284 letters)
>mm_chr5_89766682_89767358
Length = 677
Score = 480 bits (248), Expect = e-140
Identities = 272/284 (95%), Gaps = 7/284 (2%)
Strand = Plus / Minus
Query: 1 cccttcacagttaatgtgcacttctgggtgtggaggtagccaatcatccccaggtcaaaa 60
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 477 cccttcacagttaacgtgcacttctgggtgtggaggtagccaatcatccccaggtcaaaa 418
Query: 61 gaacagccaaacattcttcaagtgaagagttgctcttcagtttttcaattaactctttta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 417 gaacagccaaacattcttcaagtgaagagttgctcttcagtttttcaattaactctttta 358
Query: 121 tgcttttaaataagttgaatggctaattaaaaggaaatcttttttccagtgggaaagact 180
|||||||||||||||||||||||||| ||||||||| | |||||||||||||||||||||
Sbjct: 357 tgcttttaaataagttgaatggctaactaaaaggaatttttttttccagtgggaaagact 298
Query: 181 ttgaataattgatcatgcatttttgacattggcttttaaataaatacaaatgtcagttaa 240
|||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 297 ttgaat-------catgcatttttgacattggcttttaaataaatacaaatgtcagttaa 245
Query: 241 gtctccaagaactttttttcaatgataattgagtatttattgaa 284
||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 244 gtctccaaggactttttttcaatgataattgagtatttattgaa 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 284
Length of database: 677
Length adjustment: 9
Effective length of query: 275
Effective length of database: 668
Effective search space: 183700
Effective search space used: 183700
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no181_n08.g1 MSMg01no181_n08.g1 CHROMAT_FILE:
MSMg01no181_n08.g1 PHD_FILE: MSMg01no181_n08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:55:24 2005
(221 letters)
>mm_chr5_89605886_89606506
Length = 621
Score = 408 bits (211), Expect = e-118
Identities = 217/219 (99%)
Strand = Plus / Plus
Query: 3 ttgatttgtttggtgtgtcataaaactcttgcctgtaaaggacaagagtaatctacaatt 62
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 ttgatttgtttggtgtgtcataaaactcttgcctgtaaaggacaagagtaatctacaatt 262
Query: 63 ccgtacttttttgcaagatatttgcaaacaactttcattatcatacaatgtcctcttagc 122
|| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 263 ccatacttttttgcaagatatttgcaaacaactttcattatcacacaatgtcctcttagc 322
Query: 123 ctggaacccaagaagacacaagttgtgaggtatttagaaactttctcagacgagacaccc 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 ctggaacccaagaagacacaagttgtgaggtatttagaaactttctcagacgagacaccc 382
Query: 183 aatcatttccactaaccctgttgatgttcatttaggcag 221
|||||||||||||||||||||||||||||||||||||||
Sbjct: 383 aatcatttccactaaccctgttgatgttcatttaggcag 421
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 221
Length of database: 621
Length adjustment: 9
Effective length of query: 212
Effective length of database: 612
Effective search space: 129744
Effective search space used: 129744
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
