Query= MSMg01no181_p04.b1 MSMg01no181_p04.b1 CHROMAT_FILE:
MSMg01no181_p04.b1 PHD_FILE: MSMg01no181_p04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:55:33 2005
(318 letters)
>mm_chr5_84175557_84176277
Length = 721
Score = 549 bits (284), Expect = e-161
Identities = 311/322 (96%), Gaps = 5/322 (1%)
Strand = Plus / Plus
Query: 1 agggaaaaataataaccaaaattaaagacaattcctttatcattaacttccttgccagga 60
||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||
Sbjct: 201 agggaaaaataataaccaaaattaaagacaattcctttatcattaactttc-tgccagga 259
Query: 61 ggctgagtagatgggaaagctaatacacatgcccacagacaccaacagcacagaaccctt 120
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 ggctgagtatatgggaaagctaatacacatgcccacagacaccaacagcacagaaccctt 319
Query: 121 gctcctgtggctagaccctctttcagtgaattcatcatacaacttaaatttctcatacaa 180
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 320 gctcctgtggctagaccctctttcagtgacttcatcatacaacttaaatttctcatacaa 379
Query: 181 tttatgctcaagatatgatccttatttcgtacattgaaattctatataatgcgtgaaata 240
||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 tttatgctcaaaatatgattcttatttcgtacattgaaattctatataatgcgtgaaata 439
Query: 241 ggcaggcttgaattaaatgggcaaatagaagcacataatctaacatatatatat----tt 296
||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||
Sbjct: 440 ggcaggcttgaattaaatgggtaaatagaagcacataatctaacatatatatatatattt 499
Query: 297 cttgattcacactgatttggtt 318
||||||||||||||||||||||
Sbjct: 500 cttgattcacactgatttggtt 521
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 318
Length of database: 721
Length adjustment: 9
Effective length of query: 309
Effective length of database: 712
Effective search space: 220008
Effective search space used: 220008
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no181_p04.g1 MSMg01no181_p04.g1 CHROMAT_FILE:
MSMg01no181_p04.g1 PHD_FILE: MSMg01no181_p04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:55:33 2005
(543 letters)
>mm_chr5_84327753_84328695
Length = 943
Score = 1029 bits (532), Expect = 0.0
Identities = 538/540 (99%)
Strand = Plus / Minus
Query: 4 ggaattcctgtaatcttctttaatgtgagcctgcaagctcaccttcagctcatcattttg 63
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 706 ggaattcctgtaatcagctttaatgtgagcctgcaagctcaccttcagctcatcattttg 647
Query: 64 atgaatcactgaaccctgcatgctggtaatttctgaagaataatgttctttgccttcaca 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 646 atgaatcactgaaccctgcatgctggtaatttctgaagaataatgttctttgccttcaca 587
Query: 124 tactatttgattcttgcatctttcttcagtgattcttggaccttattactacagaaccaa 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 586 tactatttgattcttgcatctttcttcagtgattcttggaccttattactacagaaccaa 527
Query: 184 ttaaattgtttattgtacatgcttgtcaacttcactgttcaataatattacatagaacag 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 526 ttaaattgtttattgtacatgcttgtcaacttcactgttcaataatattacatagaacag 467
Query: 244 aaaatatcaaggcctactcgtttactaacaatattactaacaatatatttatataaatag 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 466 aaaatatcaaggcctactcgtttactaacaatattactaacaatatatttatataaatag 407
Query: 304 gcaaagtatatcccaatagttctataatctgggcacatatgcagcaatgaattaaactgt 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 406 gcaaagtatatcccaatagttctataatctgggcacatatgcagcaatgaattaaactgt 347
Query: 364 tttgattccctgagcattgcacatgtgtgttgcatccacccaagcactctctagctctct 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 346 tttgattccctgagcattgcacatgtgtgttgcatccacccaagcactctctagctctct 287
Query: 424 tgatttgctaatgaaacacacacacacaccagctaattttgatttaccttgactagctta 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 286 tgatttgctaatgaaacacacacacacaccagctaattttgatttaccttgactagctta 227
Query: 484 atgactggggctttctaaaaatcctctcggctagcacacacttcccttcaatattcctgg 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 226 atgactggggctttctaaaaatcctctcggctagcacacacttcccttcaatattcctgg 167
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 543
Length of database: 943
Length adjustment: 10
Effective length of query: 533
Effective length of database: 933
Effective search space: 497289
Effective search space used: 497289
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
