BAC Information

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BAC

Clone NameMSMg01-182F23
Chromosome5 (Build37)
Map Location 19,192,390 - 19,192,756
singlet/doubletsinglet
Overlap geneMagi2
Upstream gene4921504A21Rik
Downstream geneLOC100041850
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-182F23.T7 (MSMg01no182_f23.b1)MSMg01-182F23.TJ (MSMg01no182_f23.g1)
ACCAG375273AG375274
length697719
length of high quality
(start - end)
379 (43 - 421)298 (76 - 373)
definitionCHROMAT_FILE: MSMg01no182_f23.b1 PHD_FILE: MSMg01no182_f23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:56:06 2005CHROMAT_FILE: MSMg01no182_f23.g1 PHD_FILE: MSMg01no182_f23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:56:06 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCAAGAGGATCCGCGGA
ATTCATGACCTGACCCCAATGCAAGTCAGTTTTTTTTTTCTATCTTGACA
CGACCCTGCTAATTGGCTATTAATCAATCAAGTTCTAAATTGTTTTATTT
TCATAATGTCATTGTCAGAAATATTAAATAAGATATTTATCGGGGAAAAG
AAACTTTTTAATTGAGAGGATTTCATTCCTGTATTGATATAAGAAGAAAT
AAATATATAAAGGTATCTTTATTATCTGAAAGCTTTTTAAATTTTATGAA
TTTTGCTTATAGAAATTTAGCTCTATAAAATTTAATATTTTAAATTCTTG
TGTAAAATTATAACAATGTAAAACTTTATAAATAGGTATTATGCAGGTTC
CCAATTAGTCACATTACAACTTCATAGGAGTGCTGCTTTTGTTAATCATG
TCAGGAGTTATAGAAGATTACCAGAAGGAAAAGAATTAACATTTTTAAAA
ACACCTATACACAAGTATTTTGTATAGTTTTATTTAGCAAAATCCATTGC
CCTTACTTTTCAAACTAACAAACTTACTCCTGGAGAGCTAGTGAACACTT
CTCTAAATCACACACTCATAAGCACATGAAGAGAAATCCAAGCCTTTTTC
TGTCTTCTACCAGGAGTCATCTATTTGGCGGACCATGTTATATCTTG
GAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXATGCAGTTCTAGTGCGGATCAGCAG
AGGCAGTTGAAGCCAGAGAATAAGAAAGAAAGAGTCAGAAGATTAGAATA
AACTGACAGAGTTAGTTTGAAGCCAAGTAAAGGAATTCAGTGAGGAGCTA
AGAGTAATCAGATTGAATCAGTCAGCTGGGAAAGGAGTTTGAGCCAGAAC
AGCTGAGTTGAACCAGCCAGCCAGAGTTCAGAGAGAATTAGAAATGGTGA
GGCTGGGAGGTGGTGGCACAGCAGGCCTTTAATTCCAGCACTTGGGAGGC
AGAGGAAGGTATTTTTCTGACCCCCCGCCAAGCCTGGTCTACACAGTGAG
TTCCAGGACAGCCAGGGCTATCCAGAGAAACCCTGTCTCGAAAAAAACAA
ATAAGAAAAAACGACGGAAGGAAGAAAGGAAGGAAGGAAGGAAGGAAGGA
AGGAAGGAAGGAAGGAAGGAAGGAAGTTTGGTAGTTATTTATATTTTTTC
GTTATTTCTTGGCTTTCCTTATTTTTTTTTTTTTCCTCTTACTTTTTTTT
ATTTCTCTTTTTCTCTACCCTACTTTCCCTTTTCCCTTACTCCCTGCATT
CATCTTCCTTTCTTTCTTCTTTACCCTTTCCCCTTTTCCCCTTTTCGCTC
CCTTTTTACCCTTCCACTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no182_f23.b1 MSMg01no182_f23.b1 CHROMAT_FILE:
MSMg01no182_f23.b1 PHD_FILE: MSMg01no182_f23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:56:06 2005
         (379 letters)



>mm_chr5_19192184_19192961
          Length = 778

 Score =  665 bits (344), Expect = 0.0
 Identities = 362/368 (98%), Gaps = 1/368 (0%)
 Strand = Plus / Plus

                                                                       
Query: 7   gaattcatgacctgaccccaatgcaagtcagttttttttttctatcttgacacgaccctg 66
           |||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 207 gaattcatgacctgaatccaatgcaagtcagttttttttttctatcttgacacgaccctg 266

                                                                       
Query: 67  ctaattggctattaatcaatcaagttctaaattgttttattttcataatgtcattgtcag 126
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 ctaattggctattaatcaatcaagttctaaattgttttattttcataatgtcattgtcag 326

                                                                       
Query: 127 aaatattaaataagatatttatcggggaaaagaaactttttaattgagaggatttcattc 186
           |||||||||||||||||||||| |||||||||||||||||||||||| || |||||||||
Sbjct: 327 aaatattaaataagatatttat-ggggaaaagaaactttttaattgatagtatttcattc 385

                                                                       
Query: 187 ctgtattgatataagaagaaataaatatataaaggtatctttattatctgaaagcttttt 246
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 ctgtattgatataagaagaaataaatatataaaggtatctttattatctgaaagcttttt 445

                                                                       
Query: 247 aaattttatgaattttgcttatagaaatttagctctataaaatttaatattttaaattct 306
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 aaattttatgaattttgcttatagaaatttagctctataaaatttaatattttaaattct 505

                                                                       
Query: 307 tgtgtaaaattataacaatgtaaaactttataaataggtattatgcaggttcccaattag 366
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 506 tgtgtaaaattataacaatgtaaaactttataaataggtattatgcaggttcccaattaa 565

                   
Query: 367 tcacatta 374
           ||||||||
Sbjct: 566 tcacatta 573


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 379
Length of database: 778
Length adjustment: 9
Effective length of query: 370
Effective length of database: 769
Effective search space:   284530
Effective search space used:   284530
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)