BAC Information

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BAC

Clone NameMSMg01-183D13
Chromosome5 (Build37)
Map Location 24,957,831 - 24,958,145
singlet/doubletsinglet
Overlap geneMll3
Upstream geneCentg3, Gbx1, Asb10, 4931409K22Rik, Abcf2, LOC100042348, Smarcd3, 1700022A21Rik, Nub1, 2810046M22Rik, Crygn, Rheb, Prkag2, Galntl5, E130116L18Rik, Galnt11
Downstream geneGm443, Xrcc2, LOC435835, Actr3b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-183D13.T7 (MSMg01no183_d13.b1)MSMg01-183D13.TJ (MSMg01no183_d13.g1)
ACCAG375880AG375881
length713732
length of high quality
(start - end)		319 (45 - 363)505 (70 - 574)
definitionCHROMAT_FILE: MSMg01no183_d13.b1 PHD_FILE: MSMg01no183_d13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:57:10 2005CHROMAT_FILE: MSMg01no183_d13.g1 PHD_FILE: MSMg01no183_d13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:57:10 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCACAGTCACCTACCTCTGCAGTGCTGGGAATAAAGGGACATGGCCCC
ATGCCCGGTCACTGTACTTTCTCGTACATATGAAAATCTCTATGCAATAC
ATCATTTACTTTCTTTAGAAAAAAAAAAAAACTATTTTTCAAAAAATTTT
CTCAAAAGTAATAATAAATGAACTAAAGCTGGTGTGTGTTGTTGTTTTAG
GTTAAGTGATGACAGGATAGGGGATTCATTACATTATTCTCTACATACTT
ACATATAGCCAACCATTTTTTTAAGATAGAAGAGTTTCTAAGAGTAAAGG
GAAAAGGATATCCTTATGAAGGAAGGCGGATAATTTTTAACAAGGATAAG
GGAGTCACCAGTGGAAACCCCCATGAAAGAAATTATTGCAGCAAAAAGAT
CTTTGCTGAAAAGTATCAGCAGAATAAAGAACTCAGAGCTTAGCGGAACT
GTGTTAGTGCAGAGCCTCCAGTACATTAAAACACAAGTCCTATGAGAAGA
CTGCCTCGTTCAAATTCTGGCTCTACAACTCTCTGGAACTCTTTGTTGAC
AAGGAAAACAGGAGTAACAACCTCCACTCATAAGATTTCATAACAACTAA
ACGTGAATATGCTTACACAGTTTTTCTAAAGTGCTGCCTCACCTAAATTC
TCATTGTCTTTCN

TGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXTTTGGTTTCTCCATCTATGGTAATTGAGAGT
TTTGCTAGGTGTAGTAGCCTGGGCTGGCATTTGTGTTCTCTTAGCGTCTG
TATGACATCTGCCCAGGATCTTCTGGCTTTCATAGTCTCTGGTGAGAAGT
CTGGTATAATTCTGATGGGTCTGCCTCTATATGTTATTTGAGCTTTTTAA
CTTACTGCTTTTAATATTCTTTCTTGGTTTAGTGCATTTTTTGTTCTGAT
TATTACATGTCAGGAGGAATTTCTTTTCTGGTCCAATCTATTTGGAGTTC
TGTAGGCTTCTTGTATGGTTGTGGGCATCTCTTTCTTTAGGTTAGGGAAG
TTTTCTTCTATAATTTTGTTGAAGGTATTTCCTGGCCCTTTAAGATATGG
AACTTCACTCTCTTCTATACCTATTATCTTTAGGTTTAGTCTTCTCTTTG
TGTCCTGGATTTCCTGGATGTTTTGGGTTAGGAGCTTTTTGCCTTTTGAG
TTTTCTTTGACTGTTGTGTTGTGTTGGTGATGCTTGTGTCTGTGATTTCT
GATCTTTTTCCTAGGCTTTCTCTCTCCAGCTTGCGATTTCTTCATTGCTT
CTCTTTCCATTTTTACACCCTGTTTGCCTCTGCCCATTTTCTTCTTCTCT
CCGTTTGTCCTTTTCTTGTCTCCCTTAAACAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no183_d13.b1 MSMg01no183_d13.b1 CHROMAT_FILE:
MSMg01no183_d13.b1 PHD_FILE: MSMg01no183_d13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:57:10 2005
         (319 letters)



>mm_chr5_24957627_24958345
          Length = 719

 Score =  538 bits (278), Expect = e-157
 Identities = 307/318 (96%), Gaps = 6/318 (1%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcacagtcacctacctctgcagtgctgggaataaagggacatggccccatgcccgg 64
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 205 gaattcacagtcacctacctctgcagtgctgggaataaagggacatgcccccatgcccgg 264

                                                                       
Query: 65  tcactgtactttctcgtacatatgaaaatctctatgcaatacatcatttactttctttag 124
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tcactgtactttctagtacatatgaaaatctctatgcaatacatcatttactttctttag 324

                                                                       
Query: 125 aaaaaaaaaaaaactatttttcaa-aa-a-attttctcaaaagtaataataaatgaacta 181
              ||||||||||||||||||||| || | ||||| ||||||||||||||||||||||||
Sbjct: 325 ---aaaaaaaaaactatttttcaataatatattttatcaaaagtaataataaatgaacta 381

                                                                       
Query: 182 aagctggtgtgtgttgttgttttaggttaagtgatgacaggataggggattcattacatt 241
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 382 aagctggtgtgtgttgttgttttaggttaagtgatgacaggataggggattcgttacatt 441

                                                                       
Query: 242 attctctacatacttacatatagccaaccatttttttaagatagaagagtttctaagagt 301
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 442 attctctacatacttacatataaccaaccatttttttaagatagaagagtttctaagagt 501

                             
Query: 302 aaagggaaaaggatatcc 319
           ||||||||||||||||||
Sbjct: 502 aaagggaaaaggatatcc 519


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 319
Length of database: 719
Length adjustment: 9
Effective length of query: 310
Effective length of database: 710
Effective search space:   220100
Effective search space used:   220100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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