Query= MSMg01no183_e12.b1 MSMg01no183_e12.b1 CHROMAT_FILE:
MSMg01no183_e12.b1 PHD_FILE: MSMg01no183_e12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:57:15 2005
(575 letters)
>mm_chr5_40238409_40239383
Length = 975
Score = 1060 bits (548), Expect = 0.0
Identities = 566/572 (98%), Gaps = 1/572 (0%)
Strand = Plus / Minus
Query: 5 gaattctctagttgccgaagct-aaacatttagcgtcatccttggctctctgctttcact 63
|||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 836 gaattctctagttggcgaagctaaaacatttagcgtcatccttggctctctgctttcact 777
Query: 64 ctttcaatgtgctcttactgatcttcctcctgtctacatcatatttcacactccttcctc 123
||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 776 ctttcaatgtgatctttctgatcttcctcctgtctacatcatatttcacactccttcctc 717
Query: 124 tatgtgctctaagctatcattcattgcctgtcttcacattattgctataacacctaatta 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 716 tatgtgctctaagctatcattcattgcctgtcttcacattattgctataacacctaatta 657
Query: 184 atttttatttcacacacaaactaaataagtcagtggtaatttttctttgtgtatagaagc 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 656 atttttatttcacacacaaactaaataagtcagtggtaatttttctttgtgtatagaagc 597
Query: 244 aagaatgacagtccaggaaagtaaacctagtcccacagcacaagtgtgtcacaaacctcc 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 596 aagaatgacagtccaggaaagtaaacctagtcccacagcacaagtgtgtcacaaacctcc 537
Query: 304 caggaagaaagcaaaatccttaatgcgagatctaaatctctatgtgtactagcctcttca 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 536 caggaagaaagcaaaatccttaatgcgagatctaaatctctatgtgtactagcctcttca 477
Query: 364 tctctccggcctccactgacccctttcactctgccaacatttttttcagttatacagaaa 423
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 476 tctctttggcctccactgacccctttcactctgccaacatttttttcagttatacagaaa 417
Query: 424 caccaagaatgccattgtctttggagtttactcatgttccctgctctggctctgccagaa 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 416 caccaagaatgccattgtctttggagtttactcatgttccctgctctggctctgccagaa 357
Query: 484 tggctgatcttctgggatggttgctcttctatacattctgttctactccctggctctgcc 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 356 tggctgatcttctgggatggttgctcttctatacattctgttctactccctggctctgcc 297
Query: 544 aggatggttgctcttccatactttcaaggctg 575
||||||||||||||||||||||||||||||||
Sbjct: 296 aggatggttgctcttccatactttcaaggctg 265
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 575
Length of database: 975
Length adjustment: 10
Effective length of query: 565
Effective length of database: 965
Effective search space: 545225
Effective search space used: 545225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no183_e12.g1 MSMg01no183_e12.g1 CHROMAT_FILE:
MSMg01no183_e12.g1 PHD_FILE: MSMg01no183_e12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:57:15 2005
(282 letters)
>mm_chr5_40150494_40151175
Length = 682
Score = 538 bits (278), Expect = e-157
Identities = 281/282 (99%)
Strand = Plus / Plus
Query: 1 actatgggctaggtcatatgaggggaggggatttggccagtgaaatggctgaagggaact 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 actatgggctaggtcatatgaggggaggggatttggccagtgaaatggctgaagggaact 260
Query: 61 aattcttggtgccaggacctgttctcacatatggtggtgtagtaggaggagcacccaaga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aattcttggtgccaggacctgttctcacatatggtggtgtagtaggaggagcacccaaga 320
Query: 121 aaaatatctcctcctataaagcttgtctatcgtgacatttgagaaataacattgctcttt 180
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaaatatctccccctataaagcttgtctatcgtgacatttgagaaataacattgctcttt 380
Query: 181 gtacccaggttgatgctaaggagagacaggggatgcgatatgagacggaacctaatgcag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtacccaggttgatgctaaggagagacaggggatgcgatatgagacggaacctaatgcag 440
Query: 241 tatctttcagtggctggagattattcccctgaaagggacagt 282
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tatctttcagtggctggagattattcccctgaaagggacagt 482
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 282
Length of database: 682
Length adjustment: 9
Effective length of query: 273
Effective length of database: 673
Effective search space: 183729
Effective search space used: 183729
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
