BAC Information

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BAC

Clone NameMSMg01-183K23
Chromosome5 (Build37)
Map Location 38,226,844 - 38,227,075
singlet/doubletsinglet
Overlap genenone
Upstream genePpp2r2c, Wfs1, Jakmip1, EG330070, Gm1043, LOC100040936, Crmp1, Evc, Evc2, LOC100040355, LOC100040988, Stk32b, Cytl1, Msx1
Downstream geneStx18, Nsg1, LOC100040397, Zfp509, Lyar, Tmem128, Otop1, Drd5, 4930487D11Rik, Slc2a9, Wdr1, 4930421P07Rik, 6820424L24Rik, Clnk
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-183K23.T7 (MSMg01no183_k23.b1)MSMg01-183K23.TJ (MSMg01no183_k23.g1)
ACCAG376200AG376201
length754781
length of high quality
(start - end)
317 (34 - 350)247 (126 - 372)
definitionCHROMAT_FILE: MSMg01no183_k23.b1 PHD_FILE: MSMg01no183_k23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:57:46 2005CHROMAT_FILE: MSMg01no183_k23.g1 PHD_FILE: MSMg01no183_k23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:57:46 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCAGAACA
TCCAATATTAGGCAGTGAAGGAAGCAATCAAAACCAGAAAGCTGGTGAAG
TTGGAGTTGAATGGGGATGCCATGTTCCAGTCCCAGCAAGCAACAGACCT
TGGAAGCCTTGGCCACATGGTTCTGGCTTTAGAGTCAAGGATAAAAGACA
GGGGTTATGGAATCTCTCTCTGAGGCTAAGGAAAGCCACTGAGGCCAGAT
GTGTAGAGCAGGGGTGTTCCTTCACAGAGACTTAGAAAAGCCATTGTGTG
ATGCTATGAAGGTGAAGCCTGGATTGCTTTGAAGACATCAAGATGTTTTT
TTTTCCATACACTGCCCCACACCTGCCTAGGAGCACTCAAAGGAGAGAAG
CTTGCTGCGATCAACAAAGATGACAGAAGTTGGAAATCTAGAGAACGCTT
TGACATCACACTTGTAGATGCAGAGCTTGGGGTTTGTCCAGCTGCTTTCT
GCCTTGTTTTGGTCTCGTATTTCCTCGCTGGGCTCCCCTTTCTTCCCTTT
TGGTATGGCAATATATACCCTGTACCATTATATGTTGAAAGTATGGCATC
TGACTCTTTTTTTTACTCATGATTTTATACGCCAATTACTGTCTTGACTC
TACTAAGAGACTCTGAATTTAGCGACCTTTACCCAAGTTTTGAGAATCCT
TATATACTGTGCCCGACCTTTTGAAAGCTTGAACTGAACCGGTTTTCTTG
CTAT
GTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXCAACAAGTTACTCTTGCTTCCGAATCAAGCTTT
GCTGAAGAGCCCTGTATCAGCCCTCAGCTTCCTCCTCTATAACACACAGG
GCCATGATGACAGGTTCAGCAAACATGCTCTACCTGATGAAGCCCTGGTG
GAAGGAAGTGGGCATTCCATCTCCCAAGACTGCAGCAGCATTCTCCCTCT
CTCTCTCTCTCTCTCTCTCCTCTCCTCTCCCTCTCCTCTCTCCTCTCTCT
CTCTCTCCTCTCTCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT
CTCTCTCTTTTTTTTTTCCCCCCCCCCCCCCCCTCTCTCTCTCTCTCTCA
CTCTCTCGCTCTCTCCCCCACAAAAAAAAAAAAAAATAGGGTGGGGGTGG
GGGGTGATTTCTATCCGACCCTAGTATCTTAATATTAATAAATAATAATC
TCTAATTATCTCTAACCACGATAGTAATAAAAATATAATGGTCCTTTATC
CTCTGAACCATCATATATTATATTTATTTTCACCTTGTTCTAATACCAAT
ATTAACTAAATAATAAATCCGCTCTAAGACAGCAAGTAGATATCAATTAT
ATACTCATACTACTCCTAGACAGGTACGTGGACTAAATAAATCTTCACAA
CGTATTGATGAAATATATTACGAACATATTATAATCACCTACCATAGCAA
ATTTCAATCTCTTTCTTGTTTTCATATTATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no183_k23.g1 MSMg01no183_k23.g1 CHROMAT_FILE:
MSMg01no183_k23.g1 PHD_FILE: MSMg01no183_k23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:57:46 2005
         (247 letters)



>mm_chr5_38226760_38227406
          Length = 647

 Score =  369 bits (191), Expect = e-107
 Identities = 225/237 (94%), Gaps = 10/237 (4%)
 Strand = Plus / Minus

                                                                       
Query: 1   agcttcctcctctataacacacagggccatgatgacaggttcagcaaacatgctctacct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 316 agcttcctcctctataacacacagggccatgatgacaggttcagcaaacatgctctacct 257

                                                                       
Query: 61  gatgaagccctggtggaaggaagtgggcattccatctcccaagactgcagcagcattctc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 256 gatgaagccctggtggaaggaagtgggcattccatctcccaagactgcagcagcattctc 197

                                                                       
Query: 121 cctctctctctctctctctctctcctctcctctccctctc-ctctctc-ctctctctctc 178
           ||||||||||||||||||||||| |||| ||||| ||||| ||||||| |||||||||||
Sbjct: 196 cctctctctctctctctctctct-ctct-ctctctctctctctctctctctctctctctc 139

                                                                    
Query: 179 -tctcctctc--tcctctctctctctctctctctctctctctctctctctctctctc 232
            |||||||||  ||||||| ||||||| |||||||| |||||||||||||| |||||
Sbjct: 138 ctctcctctccctcctctc-ctctctc-ctctctctttctctctctctctc-ctctc 85


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 148
Number of extensions: 36
Number of successful extensions: 36
Number of sequences better than 10.0: 1
Number of HSP's gapped: 36
Number of HSP's successfully gapped: 1
Length of query: 247
Length of database: 647
Length adjustment: 9
Effective length of query: 238
Effective length of database: 638
Effective search space:   151844
Effective search space used:   151844
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)