Query= MSMg01no183_l01.b1 MSMg01no183_l01.b1 CHROMAT_FILE:
MSMg01no183_l01.b1 PHD_FILE: MSMg01no183_l01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:57:46 2005
(505 letters)
>mm_chr5_12435339_12436243
Length = 905
Score = 841 bits (435), Expect = 0.0
Identities = 484/501 (96%)
Strand = Plus / Minus
Query: 5 gaattctaaattttaaaatttctaaaacaaagtttcacattttaaaattatcttgacatc 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 705 gaattctaaattttaaaatttctaaaacaaagtttcacattttaaaattatcttgacatc 646
Query: 65 atgagccttactctttaacctaatatgatggttttaccaaattcttcagagctaattgtt 124
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 645 atgagccttactctttaacctaatatgatggtattaccaaattcttcagagctaattgtt 586
Query: 125 ttgagtattcctaccaggatatcctgggtaacattcctggacaatgtcagaaacagagac 184
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 585 ttgagtattcctaccaggatatcctgggtaacattcctagacaatgtcagaaacagagac 526
Query: 185 gcagagtgttagagtggtcattaaaagggttctgtgcctcctttctgtctgtgggtagta 244
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 525 acagagtgttagagtggtcattaaaagggttctgtgcctcctttatgtctgtgggtagta 466
Query: 245 acttaaccttagctgcctgctacccttgaaactgtgaattataagaatacttaatgcatt 304
||||||||||||||| ||||||||||||||| |||| |||||||||||||||||||||||
Sbjct: 465 acttaaccttagctgtctgctacccttgaaattgtggattataagaatacttaatgcatt 406
Query: 305 tattatgaggataaaatatccattgcataaattaatgcatactattttaagtaagtcata 364
|| ||||||||| |||||||||| |||||||||||||||||||||| |||||||||||||
Sbjct: 405 taatatgaggatgaaatatccatggcataaattaatgcatactattgtaagtaagtcata 346
Query: 365 tactagtgttatttagaatggtcatattcaaattatgttagttttcattgaaaatttatt 424
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 345 tactactgttatttagaatggtcatattcaaattatgttagttttcattgaaaatttatt 286
Query: 425 tgagaataanacaacttaagcttaaaacaataatgatatgnaaatacacttaaaactcat 484
||||||||| |||||||||||| ||||||||||||||||| |||||||||| ||||||||
Sbjct: 285 tgagaataaaacaacttaagctgaaaacaataatgatatgaaaatacactttaaactcat 226
Query: 485 agtctttaaaatataactgtt 505
||||||||||||||| |||||
Sbjct: 225 agtctttaaaatatagctgtt 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 505
Length of database: 905
Length adjustment: 10
Effective length of query: 495
Effective length of database: 895
Effective search space: 443025
Effective search space used: 443025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no183_l01.g1 MSMg01no183_l01.g1 CHROMAT_FILE:
MSMg01no183_l01.g1 PHD_FILE: MSMg01no183_l01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:57:46 2005
(625 letters)
>mm_chr5_12337023_12338047
Length = 1025
Score = 1141 bits (590), Expect = 0.0
Identities = 602/612 (98%), Gaps = 10/612 (1%)
Strand = Plus / Plus
Query: 24 ttgaagttacttctaataca----------ccagagtaattcattcaccatacatttaac 73
|||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 214 ttgaagttacttctaatacatgttcctacaccagagtaattcattcaccatacatttaac 273
Query: 74 atctgtcttgaacctaagcctctacaattgtgaaaattatatttgcataatttctatcct 133
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 274 atctgtcttgaacctaagcctctacaattgtgaaaattatatttgcataatttctatcct 333
Query: 134 cttcacccttccacttctctttgtcttgcatttcaaattaattatgtgacttcaaattca 193
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 cttcacccttccacttctctttgtcttgcatttcaaattaattatgtgacttcaaattca 393
Query: 194 catatacattatggaatccctttagtattagtcgtatatgtgtgtgtttagggcggatta 253
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 catatacattatggaatccctttagtattagtcgtatatgtgtgtgtttagggcggatta 453
Query: 254 cttaggactatctctcagaggggatattcctggaagaaaatggattctccttttcttaga 313
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 cttaggactatctctcagaggggatattcctggaagaaaatggattctccttttcttaga 513
Query: 314 agtcactatttgcctacagcacttaatctaggggtgggatcttaaaaagtttcccatcaa 373
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 514 agtcactatttgcctacagcacttaatctaggggtgggatcttaaaaagtttcccatcaa 573
Query: 374 ctttggcatatctattggtggtatcatcatatatgtcttccttatgcaaccatattttgt 433
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 574 ctttggcatatctattggtggtatcatcatatatgtcttccttatgcaaccatattttgt 633
Query: 434 gatatcattttaatgggaatattttttcatttaaactgaggaattacagaagttagatac 493
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 634 gatatcattttaatgggaatattttttcatttaaactgaggaattacagaagttagatac 693
Query: 494 aaaaagaattacaacagtatttatttaaattttctgctctctaattgtagttttcctctg 553
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 694 aaaaagaattacaacagtatttatttaaattttctgctctctaattgtagttttcctctg 753
Query: 554 tgttctgcatctccactctttttgaaataacacaggctcccagtacagttaactttctcc 613
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 754 tgttctgcatctccactctttttgaaataacacaggctcccagtacagttaactttctcc 813
Query: 614 tcttaaacaaag 625
||||||||||||
Sbjct: 814 tcttaaacaaag 825
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 625
Length of database: 1025
Length adjustment: 10
Effective length of query: 615
Effective length of database: 1015
Effective search space: 624225
Effective search space used: 624225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
