BAC Information

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BAC

Clone NameMSMg01-183M09
Chromosome5 (Build37)
Map Location 84,692,880 - 84,693,191
singlet/doubletsinglet
Overlap geneEpha5
Upstream geneSrd5a2l2, LOC100039608, LOC231368, LOC100039489
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-183M09.T7 (MSMg01no183_m09.b1)MSMg01-183M09.TJ (MSMg01no183_m09.g1)
ACCAG376261AG376262
length726713
length of high quality
(start - end)
317 (43 - 359)289 (79 - 367)
definitionCHROMAT_FILE: MSMg01no183_m09.b1 PHD_FILE: MSMg01no183_m09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:57:53 2005CHROMAT_FILE: MSMg01no183_m09.g1 PHD_FILE: MSMg01no183_m09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:57:53 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCAGTCTATACTTGCATTCATTCAGCAAAATTTACGTTTTAATATTTAAT
TCAGAAAATCCCAATAGGGAACTAAGTATTCCTGGATACTCAGACATTTG
GATAAAACACACCTGTCAACAAATATGCAGGGCAGGAATTTCTTTCATTA
ACCTATTTCCTGTCATTCTTTCCATCTGTGGTTACACTGGAATTTTAATT
CTGTTCACACTCTGCTATTCCAGGGAAAGTGGCCTGAAGCAGACAGCAAG
AGGCGAGCACTAAATCGAGCACGTAAATCACTTCCTCTCTAGTGCCACAG
TCAATTTATATATTACCCTGCCATCACCGCCTAGAAAGAATATACTGTCG
AGCCGACACATTTCCCCCACTCTACTTCATATTACCGCATTGTCCAGGTG
ACTGTGCGCAATTACAATTAACCTTAGCCTGCTGCCAACAATGCCCTGTG
ATAAGCAGCTAGGCATGTGATGCCTTTAGGAAAACATTCATGGTAACATG
AAAGTGGTTTCTGAGCTCTAAGAATATTCAAAGATTGTCTTCAATTAAAC
TATGTTACAACTTTCAACTTTTCATGCCATTGAATGTGTGTACTTTTCTT
AATAAATACACTTAGCGTTTTCCCTACTTTATATTTCGTACACTCCTCCA
AAACACTTTAAATCCTTTCCTTTTCT
TCGAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTATACGTGAATCAAGATTGGAA
TTAACCTAAGTACAACTTTCAAAATAAAAGTTTACACAAAGGCCAGCCTG
GTTGACAAAGTGAGTTCCAGCACAGCCAGGGCTATACAAAGAAACCCTGT
CTTGGGAAAAAAAAAAAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAA
AGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG
AAAGAAAGAAAGAAAGAAAGAAAGAAAGGAAAAGAAAAGTTTACACAAGA
CGACAAATATTTACAGTGTTACAGGCACCATACCTACGTTGCCTGTATGA
TATCACTTTGCAGGCTACACACACATCACCCAACCATGGAAGATGGTACA
AAGGGACTAAGTGTATATTTGGCCATCTCACATTTGATCATTCATCCATT
TATTTGTAGAGTGAATATTTCAGATGATGACAGTAAGATCACTATTATAG
ATGGGGCTTTGAAATAGGTTAACTAAATCAGGTAATAAATGGTGTAGACA
TTCTTAAAAATTATAACCATAAACCCTTTTTTTTATTCCCTTTTCACGTT
TTATCTTCATGTATGATTATTTATGATATTTTTTTTCTCATCATTTATTT
TATCATTAAAATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no183_m09.b1 MSMg01no183_m09.b1 CHROMAT_FILE:
MSMg01no183_m09.b1 PHD_FILE: MSMg01no183_m09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:57:53 2005
         (317 letters)



>mm_chr5_84692676_84693392
          Length = 717

 Score =  596 bits (308), Expect = e-175
 Identities = 311/312 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcagtctatacttgcattcattcagcaaaatttacgttttaatatttaattcagaa 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcagtctatacttgcattcattcagcaaaatttacgttttaatatttaattcagaa 264

                                                                       
Query: 65  aatcccaatagggaactaagtattcctggatactcagacatttggataaaacacacctgt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aatcccaatagggaactaagtattcctggatactcagacatttggataaaacacacctgt 324

                                                                       
Query: 125 caacaaatatgcagggcaggaatttctttcattaacctatttcctgtcattctttccatc 184
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 caacaaataggcagggcaggaatttctttcattaacctatttcctgtcattctttccatc 384

                                                                       
Query: 185 tgtggttacactggaattttaattctgttcacactctgctattccagggaaagtggcctg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tgtggttacactggaattttaattctgttcacactctgctattccagggaaagtggcctg 444

                                                                       
Query: 245 aagcagacagcaagaggcgagcactaaatcgagcacgtaaatcacttcctctctagtgcc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 aagcagacagcaagaggcgagcactaaatcgagcacgtaaatcacttcctctctagtgcc 504

                       
Query: 305 acagtcaattta 316
           ||||||||||||
Sbjct: 505 acagtcaattta 516


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 317
Length of database: 717
Length adjustment: 9
Effective length of query: 308
Effective length of database: 708
Effective search space:   218064
Effective search space used:   218064
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)