Query= MSMg01no183_o15.b1 MSMg01no183_o15.b1 CHROMAT_FILE:
MSMg01no183_o15.b1 PHD_FILE: MSMg01no183_o15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:58:03 2005
(292 letters)
>mm_chr5_89351468_89352159
Length = 692
Score = 495 bits (256), Expect = e-144
Identities = 283/294 (96%), Gaps = 5/294 (1%)
Strand = Plus / Plus
Query: 2 ctctctctctctctctctctctctctctctctctc----tctctctctctctctccctcc 57
||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||
Sbjct: 198 ctctctctctctctctctctctctctctctccctccccctctctctctctctctccctcc 257
Query: 58 ccccctccctctttctctgtctgccttccttccttaaaaatagattacttcttatacaac 117
| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 ctcccttcctctttctctgtctgccttccttccttaaaaatagattacttcttatacaac 317
Query: 118 acatcctgaacacagtttctctcctactcccttacattccctacctttccccacctccac 177
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 acatcctgaacacagtttctctcctactcccttacattccctacctttccccacctccac 377
Query: 178 cgacctccccataccttcctctacctcccccccacctccctccacctcccctcttcctca 237
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 378 cgacctccccataccttcctctacctcccccc-acctccctccacctcccctcttcctca 436
Query: 238 gatccactcccccttttttttctctcagaaaacaacaggcctccaagagacaac 291
|||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 437 gatccactccccctccattttctctcagaaaacaacaggcctccaagagacaac 490
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 38
Number of extensions: 16
Number of successful extensions: 16
Number of sequences better than 10.0: 1
Number of HSP's gapped: 12
Number of HSP's successfully gapped: 1
Length of query: 292
Length of database: 692
Length adjustment: 9
Effective length of query: 283
Effective length of database: 683
Effective search space: 193289
Effective search space used: 193289
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no183_o15.g1 MSMg01no183_o15.g1 CHROMAT_FILE:
MSMg01no183_o15.g1 PHD_FILE: MSMg01no183_o15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:58:03 2005
(287 letters)
>mm_chr5_89495299_89495985
Length = 687
Score = 514 bits (266), Expect = e-150
Identities = 281/286 (98%)
Strand = Plus / Minus
Query: 1 tgtagtgtgagaacaaaggcagggcaagagaggctattgacagggtccgcacaggacatt 60
|||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 486 tgtaatgtgagaacaaaggcaggggaagagaggctattgacagggtccgcacaggacatt 427
Query: 61 aaggacttgaggcagagcagaagaaagctgcaagcagagtcttcagaaatagagccttga 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 426 aaggacttgaggcagagcagaagaaagctgcaagcagagtcttcagaaatagaggcttga 367
Query: 121 ctttgcaggttgaatattcacgtttacaatgggcctaatcatccagatctcagttctaga 180
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 366 atttgcaggttgaatattcacgtttacaatgggcctaatcgtccagatctcagttctaga 307
Query: 181 acataaaaaggcagaaacttttgcagatgaacagacatctatataaagggtcttggggtc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 acataaaaaggcagaaacttttgcagatgaacagacatctatataaagggtcttggggtc 247
Query: 241 ttcgtgagaggatgggtgaaggtctacagacagaaaggatgtttta 286
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 ttcgtgagaggatgggtgaaggtctacagacagaaaggatgtttta 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 687
Length adjustment: 9
Effective length of query: 278
Effective length of database: 678
Effective search space: 188484
Effective search space used: 188484
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
