BAC Information

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BAC

Clone NameMSMg01-184N12
Chromosome5 (Build37)
Map Location 87,049,690 - 87,050,003
singlet/doubletsinglet
Overlap geneTmprss11f
Upstream geneCenpc1, LOC100039521, AI586015, Ube1l2, Gnrhr, Tmprss11c, Tmprss11d, Tmprss11a, 9930032O22Rik
Downstream geneTmprss11b, Tmprss11e, A730098D12Rik, LOC622056, Ugt2b34, Ugt2b1, LOC665424, LOC545767, Ugt2b35, Ugt2b36, LOC665440, Ugt2b5, LOC435848, Ugt2b37, LOC665468, Ugt2a3, LOC665476, LOC665483, LOC665494, LOC100039818, Ugt2b38, Ugt2a2, Ugt2a1, Sult1b1, Sult1d1, Sult1e1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-184N12.T7 (MSMg01no184_n12.b1)MSMg01-184N12.TJ (MSMg01no184_n12.g1)
ACCAG377006AG377007
length732844
length of high quality
(start - end)
318 (60 - 377)35 (71 - 105)
definitionCHROMAT_FILE: MSMg01no184_n12.b1 PHD_FILE: MSMg01no184_n12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:59:23 2005CHROMAT_FILE: MSMg01no184_n12.g1 PHD_FILE: MSMg01no184_n12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:59:23 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AAAAANNNNCCTTCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXCGCGGAATTCCACTTCAATTCCTGTTTTGCAGCCTAAAATC
ACCCATATCTCCCCATTTACTCTCTCAGTTCATGTTTATTTAATGTCCAT
TTAGACAGTATAGGACTTTAGGCTCAAGATTTCTAATAACCCATAAAAAT
TACGATAAAATTTAATCTGATTCAAAGTTTAACTATCTGACAAAAAATAA
GTTGATTTTGCTTTATACCCTCAGATAATATGGGGAACTTTTGTGTTACT
ATAAGAGATTAATGTTTATATTAATTTTGAAAAATTTAAACCACACAGAG
AAGACATTTAAATAGTATCTTTTATAACATTCTCCCGCGACAAAATATTT
TTATCCTTTTAAATCTGAGGTTATATTTACATTATTTCTCTCATCCCTTT
CTTTCCTTCAAGCCCTTCCATGTACATACTAATATGAGTGAGAGATTCTG
GCTCAGGGAATAAGGTGGTGGAGGATAAAGCAGGACTCTGGCCTCCTCCT
ATATTCATAGGTATTCACACAGCACATGTGCACACACCCCTAAGAAGTAC
TTTATTTCAAATGCAGTGATAACACCTATTTTACACATATAATGAAGTAC
TTTACAGACGTAAAGCACAGTTAAATGTGATGGCCTATCCAACTCTTTTG
CTTTTATATCATCTGCATTCTTCTATCCCTCT
ACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXCTACTTTGTCCTTCTGGACGTAAATGTGTT
CATAAGAATGAACTAGGTCAGGGGTAAGAGGGCAATAAAAAGGGTGTAAA
ATGCCAACTTGACTTCCAGGTGTAATCTGACTGTTGTGCTCTTGGACAAT
AGCACCTGTGACTGCCCGCATACACATAAGCTCTGGGTAAGTCTGAGGCC
ATTAACACCCTGCCATGGGGTGATCTGGGACTCCTGAAGACTCCTCACTC
TGTGAAGATCTTTTCTCATTTACTGGCTGATGAATAAAGATTATTTGCAT
TCTTCTATTTTTTATCCACCCCCCCCCCCGCCATATCCTACTGAAATCAA
TCTGATATCCCCGCCCCTTCTGAATAATAAATAATAGACACTTATTCGAT
ATCTCAAACAAATAATAATCTAATTTTTAACGTATGCACATCTATCTTTA
TAATCTTCATGCCTTTACATTTTTTTCTCAATTTTTCTTTCTACCTCTCA
ATTTTCATATCATTTATTCTTTATCAAGTCCCTTATTTATCAAATTTAAC
GACTTAAATATTAATAAAATGATATATCCTCTATATATCATGTTTATTAA
ATAATTATTTCTTATATTACTTCAACTGAATTAATTACCCCCTCTCCTTA
CAAACACTTATTCCTCTTTTATATATATAATCCTCTCCATCATTATTTTT
TTATTTTACATCACATCCTATATCTCTATTACTATATTTATTTATTTATA
TTTACCTCTTTATCATCCTCATATTACTCTTCTATTTATTCATA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no184_n12.b1 MSMg01no184_n12.b1 CHROMAT_FILE:
MSMg01no184_n12.b1 PHD_FILE: MSMg01no184_n12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:59:23 2005
         (318 letters)



>mm_chr5_87049486_87050203
          Length = 718

 Score =  592 bits (306), Expect = e-173
 Identities = 312/314 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccacttcaattcctgttttgcagcctaaaatcacccatatctccccatttactct 64
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 205 gaattccacttcaattcctgttttgcagcctaaaatcacccatttctccccatttactct 264

                                                                       
Query: 65  ctcagttcatgtttatttaatgtccatttagacagtataggactttaggctcaagatttc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ctcagttcatgtttatttaatgtccatttagacagtataggactttaggctcaagatttc 324

                                                                       
Query: 125 taataacccataaaaattacgataaaatttaatctgattcaaagtttaactatctgacaa 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 taataacccataaaaattacgataaaatttaatctgattcaaagtttaactatctgacaa 384

                                                                       
Query: 185 aaaataagttgattttgctttataccctcagataatatggggaacttttgtgttactata 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 aaaataagttgattttgctttataccctcagataatatggggaacttttgtgttactata 444

                                                                       
Query: 245 agagattaatgtttatattaattttgaaaaatttaaaccacacagagaagacatttaaat 304
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 445 agagattaatgtttatattaattttgaaaaatttaaaccagacagagaagacatttaaat 504

                         
Query: 305 agtatcttttataa 318
           ||||||||||||||
Sbjct: 505 agtatcttttataa 518


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 318
Length of database: 718
Length adjustment: 9
Effective length of query: 309
Effective length of database: 709
Effective search space:   219081
Effective search space used:   219081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)