NACCAAANNNGGTATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXCGCGGAATTCCTTTCATTTTTAAGGGACCTCGGCTCAGAA
CAAAAGAGGAATTGTTGTTTCATCAACAAGAATAACCCCCACAAGCCAGA
TAAAGCAGAGTTGATGATTTTATTTAAGATATTTAGAAAAAAATGTATTA
TATGTACCATGAATACTCTATCTGCATGTACACCTGTATGCCAGAAGAGG
GCATCAGGTCATACTATAGATGGTTGTGAGCTACCACGTGGTTGCTGGGA
ACTGAACTCAGGACCTCTGGAAAAGCAGCCAGTGCTCTTAGCCACCGAGC
CATCTCTAGCCCCCTACTTGAACTATTTTAATATAGATCTTCCGTACGAG
GGTTAGAAGAAAAATAAAAGAGGATCTCACAAACACATACTCAAGCATGG
TCAAGGCTCACCAAAGCAGAGGCACAGCTAATTGTCTCAGCACAGATGAC
CATATACCCTTTTGGGGCTTTCAAGTTGCATCTCAAAAATGTTGTTAAGT
TGCCTATCCCGGTTTTCTCTCTTTTGATCAGTGAGATTATAGGGCTGCTC
TAGGGGTATCTTGGGTCAAATTACAGTCTGATAAAGTAAAACCTAAGAAC
CAGTAGAGATGTGCAAGAGGATAAAGGGAGGTCCTCTTCCTGCGAATGAA
GCCTTTAGCAAGATGCTAGATAACCCCATGTTTACTGCTGGGGACCTGGG
AAG

CCTTCTCCTTCTCTCCATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAAATCCAACAAAGGAG
AGGTTGGAGGAAGGTATTGTCTTAAAAGTAAGATTGCCCAACTTTGCAAA
GCCATTTGACAGATTTCTGATTTAGATTTACTGAATCTTCAAGGGGCTGG
CATTCCTGAAGTGCAAGGAAGTCATCAAAGGACAAAACAAGAGGTGAATA
TCTTTAGAATTGAGAGAATTTCCATCAATGGATAAAAGTGCTTGCTGCCA
AGCTTGCTGGCATGAGTTTGATCTCTAGGACACACTTTTTTTTAGGAGAG
AACTGTATCAAGTTGTCCTCTAACTCTATTTATGCATGCTGCAGCATGCC
TCCACTATGTAAATAAATATATAAATAAATAACCACATAAATAAATACAT
AATAAAGGTAATAGAAATGGAGAGAATTGAAAGAGCCTATACATGGTGGC
TAAGAGTCAACAAGAATGAATTTATGCTAAACAACTTGTTTGTATTGGAA
TTGTAACCTTGGGCCTTAACATATGAGCCTAAGCACCAAGAATTTGGGGG
ATTAAAAAAAGCATTAAATAAAAGAAGTCAAGAGCCCTTTTTTATCATTC
TCCATCACCTCTGAGGATCTTTAAGATAATGACTATGACACTCAATACCC
TAGCAATGCCATCTGTATCCAGTTGTTAAGACAAATTCATGAGGATGGCA
CACCT

Query= MSMg01no185_d11.b1 MSMg01no185_d11.b1 CHROMAT_FILE:
MSMg01no185_d11.b1 PHD_FILE: MSMg01no185_d11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:59:51 2005
         (358 letters)



>mm_chr5_133607525_133608282
          Length = 758

 Score =  638 bits (330), Expect = 0.0
 Identities = 351/358 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   acgagggttagaagaaaaataaaagaggatctcacaaacacatactcaagcatggtcaag 60
           |||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||
Sbjct: 201 acgagggttagaagaaaaataaaagaggatctcagaaatacatactcaagcatggtcaag 260

                                                                       
Query: 61  gctcaccaaagcagaggcacagctaattgtctcagcacagatgaccatatacccttttgg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gctcaccaaagcagaggcacagctaattgtctcagcacagatgaccatatacccttttgg 320

                                                                       
Query: 121 ggctttcaagttgcatctcaaaaatgttgttaagttgcctatcccggttttctctctttt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggctttcaagttgcatctcaaaaatgttgttaagttgcctatcccggttttctctctttt 380

                                                                       
Query: 181 gatcagtgagattatagggctgctctaggggtatcttgggtcaaattacagtctgataaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gatcagtgagattatagggctgctctaggggtatcttgggtcaaattacagtctgataaa 440

                                                                       
Query: 241 gtaaaacctaagaaccagtagagatgtgcaagaggataaagggaggtcctcttcctgcga 300
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||
Sbjct: 441 gtaaaacctaagaaccagtagagatgtgcaagaggatgaagggaggtcctcttcctgtga 500

                                                                     
Query: 301 atgaagcctttagcaagatgctagataaccccatgtttactgctggggacctgggaag 358
           ||||||||||||||||||||||||| || ||||||||||| |||||||||||||||||
Sbjct: 501 atgaagcctttagcaagatgctagaaaatcccatgtttacagctggggacctgggaag 558


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 358
Length of database: 758
Length adjustment: 9
Effective length of query: 349
Effective length of database: 749
Effective search space:   261401
Effective search space used:   261401
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no185_d11.g1 MSMg01no185_d11.g1 CHROMAT_FILE:
MSMg01no185_d11.g1 PHD_FILE: MSMg01no185_d11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:59:51 2005
         (247 letters)



>mm_chr5_133711097_133711743
          Length = 647

 Score =  447 bits (231), Expect = e-130
 Identities = 243/247 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tccaacaaaggagaggttggaggaaggtattgtcttaaaagtaagattgcccaactttgc 60
           |||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||
Sbjct: 447 tccaacaaaggagaggttggaggaaggtattgtcttaaaagtaagattggaaaactttgc 388

                                                                       
Query: 61  aaagccatttgacagatttctgatttagatttactgaatcttcaaggggctggcattcct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 aaagccatttgacagatttctgatttagatttactgaatcttcaaggggctggcattcct 328

                                                                       
Query: 121 gaagtgcaaggaagtcatcaaaggacaaaacaagaggtgaatatctttagaattgagaga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 gaagtgcaaggaagtcatcaaaggacaaaacaagaggtgaatatctttagaattgagaga 268

                                                                       
Query: 181 atttccatcaatggataaaagtgcttgctgccaagcttgctggcatgagtttgatctcta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 atttccatcaatggataaaagtgcttgctgccaagcttgctggcatgagtttgatctcta 208

                  
Query: 241 ggacaca 247
            ||||||
Sbjct: 207 agacaca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 247
Length of database: 647
Length adjustment: 9
Effective length of query: 238
Effective length of database: 638
Effective search space:   151844
Effective search space used:   151844
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)