Query= MSMg01no185_d13.b1 MSMg01no185_d13.b1 CHROMAT_FILE:
MSMg01no185_d13.b1 PHD_FILE: MSMg01no185_d13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:59:52 2005
(307 letters)
>mm_chr5_31593093_31593799
Length = 707
Score = 571 bits (295), Expect = e-167
Identities = 301/303 (99%)
Strand = Plus / Minus
Query: 5 gaattccacaacccctcttatgggcccgccctaggactcactgcgcttgcgcacgtcctg 64
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 507 gaattccacaacccctcttatgggcccgccttaggactcactgcgcttgcgcacgtcctg 448
Query: 65 ttcgctccgccgcgaacccactacgtgaccttatgacgtatgtcgcactcacgttgcctg 124
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 ttcgctccgtcgcgaacccactacgtgaccttatgacgtatgtcgcactcacgttgcctg 388
Query: 125 tgcgtcagcggttagcgccgccgatgcttggcgggttgtccaggtaaccacgggagttgt 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 tgcgtcagcggttagcgccgccgatgcttggcgggttgtccaggtaaccacgggagttgt 328
Query: 185 ctcggtcagtgagcatccgagaccggtgtacgtcatgcagttgaagcacctgaggaccct 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 ctcggtcagtgagcatccgagaccggtgtacgtcatgcagttgaagcacctgaggaccct 268
Query: 245 gctgagccctcaggtgaggaatcgcatgcctcttccattcccaggccaccaggcgttcaa 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 gctgagccctcaggtgaggaatcgcatgcctcttccattcccaggccaccaggcgttcaa 208
Query: 305 aaa 307
|||
Sbjct: 207 aaa 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 307
Length of database: 707
Length adjustment: 9
Effective length of query: 298
Effective length of database: 698
Effective search space: 208004
Effective search space used: 208004
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no185_d13.g1 MSMg01no185_d13.g1 CHROMAT_FILE:
MSMg01no185_d13.g1 PHD_FILE: MSMg01no185_d13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:59:52 2005
(280 letters)
>mm_chr5_31496417_31497096
Length = 680
Score = 522 bits (270), Expect = e-153
Identities = 276/280 (98%), Gaps = 4/280 (1%)
Strand = Plus / Plus
Query: 1 attccccggattaatacaaaccattcgctgctttccttgtgtgttcttggtcccatcagt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 attccccggattaatacaaaccattcgctgctttccttgtgtgttcttggtcccatcagt 260
Query: 61 gtataagatgtccaaatgtttcccccctcaccagatagtgagctctgtatagatagtgaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtataagatgtccaaatgtttcccccctcaccagatagtgagctctgtatagatagtgaa 320
Query: 121 tctctagagagccctgtttctactagatgtcagtcctgagcaagttacctaatttcttcc 180
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 321 tctctagagagccctgtttctactagatgtcagtcctgagcaagtta----atttcttcc 376
Query: 181 cgcctcagtttctccagataaaaagtagattcttggatcagcaaagtcccttcaacacac 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 cgcctcagtttctccagataaaaagtagattcttggatcagcaaagtcccttcaacacac 436
Query: 241 ttgagtatgctatgactttattatctgtgcacataagtgt 280
||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 ttgagtatgctatgactttattatctgtgcacataagtgt 476
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 280
Length of database: 680
Length adjustment: 9
Effective length of query: 271
Effective length of database: 671
Effective search space: 181841
Effective search space used: 181841
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
