BAC Information

Click to search

BAC

Clone NameMSMg01-185F11
Chromosome5 (Build37)
Map Location 98,227,931 - 98,228,215
singlet/doubletsinglet
Overlap genenone
Upstream geneAnxa3, EG666266, LOC670358, Bmp2k, Paqr3, LOC100040598, EG433923, EG666293, C80008, Gk2
Downstream geneAntxr2, EG435856, LOC666315, LOC666320, LOC666326, Prdm8, Fgf5, 1700007G11Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-185F11.T7 (MSMg01no185_f11.b1)MSMg01-185F11.TJ (MSMg01no185_f11.g1)
ACCAG377361AG377362
length741774
length of high quality
(start - end)
285 (82 - 366)157 (94 - 250)
definitionCHROMAT_FILE: MSMg01no185_f11.b1 PHD_FILE: MSMg01no185_f11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:00:00 2005CHROMAT_FILE: MSMg01no185_f11.g1 PHD_FILE: MSMg01no185_f11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:00:00 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTTAATTTAANNNNAACATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCAGAATTCATTAATAATAA
TTATGATGATTTCAACAATAACAATGATCTGTTTTGGCATCACCTCTCTG
AAGAGTAAAAGACACGGAGAAGTTTATTTCACTTATATTTAATATTTTAA
TGTTTATTATATTTTTATTTATAAGTATGAATAATATATATTCATATGAA
CATATATGAATATATATTCATAAAAGTATGAATGTGAACCTTTTACAGGA
GGTCTTCAAGAAGATAGTAGATTCCCCTGGAGCTGTAGTTAGAAGGAACT
GTGAGTTACCTGAAGTGGATGCTTTTTTTCTCCCCCCCCCCCCCCAGAAG
GTCAGTAAATGCTCATAATATAGTCAGCCCCCCCTCTTCAAAATAGGGAG
GGGAGGTGGGGTTCGCTTATTTCTTCTTTTTTTTTACTCTTTATTTTCAA
TCAATGAAGTGAATGTGTATTACCTCCTTGTTTTTTGTTTTCTCACATTT
ATTTTTGTCTTTTTCTTACCTTCCCGTTCTTCCGTTTGCACCTTCTATTA
CCCCTTTTTCCATTCCCCTCTTTTCATTTCCCCTTCCCATCCTTTTCCTT
CTTCTCCTTTTCTACCCATTCCTCCTTTCCTTCCCCCCCGTGTTCCCCTC
CTTTTTTCCCCTTTATCCCCTTTCCCCCTTTTTTATCCTTC
CCTATTTATCCNNNCATCTATGAXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGTCACC
ACTCGAAACCGCACAGATCAGTCAGGAATGGAGTGGAGTGGGAGGTTATC
CGTGGGCCTGTGATGAGGAGCCCAGGGCTGGGGACTCCCAAACTCCTGGA
CATCCAGGTGCTGTGCAGAGAGGAGTAGGGAACAGAAGAGGCTCATGGGC
TGAATGAGCCTGGGGCCTTGGGGTAGGTCGAACTCCGGTTTAGTTCATCT
GGTATTGTCTTTAGCTTAGCTGCAATTGCCTGGAATCATGAAGGGACCTT
CTTTGGTAGAATTAAGCATTTTTTTTTTTTTCCCCCCCCCCCCCCCCATG
TTCTCCTTGGTTATTCTTTTTCTTCTTTCCCCCCCCACGATAAAAAATCT
CGTTTATTGTGTGTTGTCCTTTCCTTTCCGACTGTATTATCCTTCTTTCT
GTTTCTTTCCCTCCACTTCTCCCCTTTTATTTTTCCTCTTCTGCCTACTA
CCGCTGCCCCTTTCATCTTTTCCCCCATACTCTTTCTTATACTTCTCCCT
TTTTGTCTTTCTCTTTTCCGTCTCCCCGCCTATTCTAGCCATCACTGTTT
TTTTTTTATTCCCTCTATCCCGCCCCACCCCGCCCTTCCATTCCCCTCCC
CACTCTCTTTCTTCTCACCATTTCCCTCCTCCCCTTTTTTTCTCCTCCTC
TTTTTACCCTTCCATTCTTCCTCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no185_f11.b1 MSMg01no185_f11.b1 CHROMAT_FILE:
MSMg01no185_f11.b1 PHD_FILE: MSMg01no185_f11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:00:00 2005
         (285 letters)



>mm_chr5_98227914_98228598
          Length = 685

 Score =  543 bits (281), Expect = e-159
 Identities = 284/285 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   cagaattcattaataataattatgatgatttcaacaataacaatgatctgttttggcatc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 cagaattcattaataataattatgatgatttcaacaataacaatgatctgttttggcatc 243

                                                                       
Query: 61  acctctctgaagagtaaaagacacggagaagtttatttcacttatatttaatattttaat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 242 acctctctgaagagtaaaagacacggagaagtttatttcacttatatttaatattttaat 183

                                                                       
Query: 121 gtttattatatttttatttataagtatgaataatatatattcatatgaacatatatgaat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 182 gtttattatatttttatttataagtatgaataatatatattcatatgaacatatatgaat 123

                                                                       
Query: 181 atatattcataaaagtatgaatgtgaaccttttacaggaggtcttcaagaagatagtaga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 122 atatattcataaaagtatgaatgtgaaccttttacaggaggtcttcaagaagatagtaga 63

                                                        
Query: 241 ttcccctggagctgtagttagaaggaactgtgagttacctgaagt 285
           |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 62  ttcccctggagctggagttagaaggaactgtgagttacctgaagt 18


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 285
Length of database: 685
Length adjustment: 9
Effective length of query: 276
Effective length of database: 676
Effective search space:   186576
Effective search space used:   186576
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)