Query= MSMg01no185_o20.b1 MSMg01no185_o20.b1 CHROMAT_FILE:
MSMg01no185_o20.b1 PHD_FILE: MSMg01no185_o20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:00:45 2005
(308 letters)
>mm_chr5_49601415_49602122
Length = 708
Score = 580 bits (300), Expect = e-170
Identities = 303/304 (99%)
Strand = Plus / Plus
Query: 5 gaattcaacgttgaactattagataaacataactgaaaagataatacaaatgtaaccttg 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcaacgttgaactattagataaacataactgaaaagataatacaaatgtaaccttg 264
Query: 65 taattggtcaaaatatgctactctttacatggctgagggtacaattgtttagtcatttga 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 taattggtcaaaatatgctactctttacatggctgagggtacaattgtttagtcatttga 324
Query: 125 acctgccagtgtatgtataaaggtctgctgggtagacaaagagctgtgaaacaagctgag 184
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 325 acctgccagtgtatgtataaaggtctgctgggtagacaaagagctgtaaaacaagctgag 384
Query: 185 cagctgttcttttcctggcaacaactggaaatacctcttctttctctagtaactattttc 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 cagctgttcttttcctggcaacaactggaaatacctcttctttctctagtaactattttc 444
Query: 245 ccctttcccattggagagactaatgggtggcaaggaatattaatataatttaaaattttt 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ccctttcccattggagagactaatgggtggcaaggaatattaatataatttaaaattttt 504
Query: 305 aaag 308
||||
Sbjct: 505 aaag 508
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 308
Length of database: 708
Length adjustment: 9
Effective length of query: 299
Effective length of database: 699
Effective search space: 209001
Effective search space used: 209001
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no185_o20.g1 MSMg01no185_o20.g1 CHROMAT_FILE:
MSMg01no185_o20.g1 PHD_FILE: MSMg01no185_o20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:00:45 2005
(621 letters)
>mm_chr5_49729675_49730695
Length = 1021
Score = 777 bits (402), Expect = 0.0
Identities = 449/466 (96%), Gaps = 6/466 (1%)
Strand = Plus / Minus
Query: 159 agtatgtggctttcttaacaacactaatagaattcattagttatgtctaaatgagcatat 218
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 1018 agtatgtggctttcttaacaacactaatagaactcattagttatgtctaaatgagcatat 959
Query: 219 gggaatggtgagatggcctcccaacctgaggaccagagttcaatctctgggattgtcata 278
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 958 gggaatggtgagatggcctcccaacctgaggaccagagttcaatctctgggattgtcata 899
Query: 279 gtggagggaaagagccaactgctaaaggttatcttctgaccttca--cagcagtgacaag 336
|||||||||||||||||||||||||||||| | ||||||||| | |||||||||||||
Sbjct: 898 gtggagggaaagagccaactgctaaaggttgtattctgacct--atgcagcagtgacaag 841
Query: 337 acattcatgcacccatacatgtaaacatgctattaaattcaataagcaaattaaaataaa 396
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 840 acattcatgcatccatacatgtaaacatgctattaaattcaataagcaaattaaaataaa 781
Query: 397 caggaagaaacacatacattttgattcttagtctgagtaactgggcagctgatgagtt-c 455
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
Sbjct: 780 caggaagaaacacatacattttgattcccagtctgagtaactgggcagctgatgagttgc 721
Query: 456 caaataaatacactatggcatcattgagcttcaggatcattgcatctgattggtatcaac 515
| |||||||||||||||||| | ||||| ||||||| ||||||||||||||||||||||
Sbjct: 720 c-aataaatacactatggcacctttgagtttcaggaccattgcatctgattggtatcaaa 662
Query: 516 tccttgaccaggaaagtccatgagttcagtagttagtgccattaaaatttttgtcagttc 575
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 tccttgaccaggaaagtccatgagttcagtagttagtgccattaaaatttttgtcagttc 602
Query: 576 ctaatagttaatattctaagaaagaacatatgatgaactgagagtg 621
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 ctaatagttaatattctaagaaagaacatatgatgaactgagagtg 556
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 621
Length of database: 1021
Length adjustment: 10
Effective length of query: 611
Effective length of database: 1011
Effective search space: 617721
Effective search space used: 617721
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
