Query= MSMg01no186_f08.b1 MSMg01no186_f08.b1 CHROMAT_FILE:
MSMg01no186_f08.b1 PHD_FILE: MSMg01no186_f08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:01:17 2005
(320 letters)
>mm_chr5_15435847_15436566
Length = 720
Score = 605 bits (313), Expect = e-178
Identities = 313/313 (100%)
Strand = Plus / Minus
Query: 5 gaattcagtttataggtctgagaagcctaaggttgttagagcatatacacagccatctga 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 517 gaattcagtttataggtctgagaagcctaaggttgttagagcatatacacagccatctga 458
Query: 65 atacatctaaggaacttcactcttaatatcctatattccattcacagatgacaaaataag 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 457 atacatctaaggaacttcactcttaatatcctatattccattcacagatgacaaaataag 398
Query: 125 catcatgttactatcgttcattatagaggaaggacatagacttttgtcgttttatttgga 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 catcatgttactatcgttcattatagaggaaggacatagacttttgtcgttttatttgga 338
Query: 185 cacatctaaaaactaatagaatagatattatccagcaaaagtattttattcaaaatatga 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 cacatctaaaaactaatagaatagatattatccagcaaaagtattttattcaaaatatga 278
Query: 245 aacatgatcaaaagggatcaccaagattcttgtaaaatttgaagaaaaaattactatgat 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 277 aacatgatcaaaagggatcaccaagattcttgtaaaatttgaagaaaaaattactatgat 218
Query: 305 gcctaagcaagta 317
|||||||||||||
Sbjct: 217 gcctaagcaagta 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 320
Length of database: 720
Length adjustment: 9
Effective length of query: 311
Effective length of database: 711
Effective search space: 221121
Effective search space used: 221121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no186_f08.g1 MSMg01no186_f08.g1 CHROMAT_FILE:
MSMg01no186_f08.g1 PHD_FILE: MSMg01no186_f08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:01:17 2005
(512 letters)
>mm_chr5_15368615_15369525
Length = 911
Score = 936 bits (484), Expect = 0.0
Identities = 505/512 (98%), Gaps = 1/512 (0%)
Strand = Plus / Plus
Query: 1 tttatttttttaaataggagaatgttcaaatgctaatgtgttagtctgatttctgagcta 60
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttatttttttaaatagaagaatgttcaaatgctaatgtgttagtctgatttctgagcta 260
Query: 61 caacaaaacactggagactttacaaagaacaggatttttgctggacatgatggcacaaaa 120
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 caacaaaacactggagagtttacaaagaacaggatttttgctggacatgatggcacaaaa 320
Query: 121 tttgattccatgtgcattgtcccttagacaggaggactctgaatttaatgttattctgag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tttgattccatgtgcattgtcccttagacaggaggactctgaatttaatgttattctgag 380
Query: 181 ctgcatatattgaatacctgctccaaaagaacagcaaaataacaaaaagcaagggattcc 240
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 381 ctgcatatattgaatacctgctccaaaagaacagcaaaataacaaaacgcaagggattcc 440
Query: 241 agtattgtaagacaacagaaactattaagcattagcaatattagtaacctgttaaatttt 300
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 441 agtattgtaagacaacagaaactattaagcattagcaatattagtagcctgttaaatttt 500
Query: 301 tatgtgtgttagtgaaatattatgaacagacctgttgcttaacagcttttgagatatccc 360
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 501 tatgtgtgttagtgaaatattatgaacagacctgttgcttaagagcttttgagatatccc 560
Query: 361 agaaaaaaatgagatgcaagagcaaaaaaaatgtctatcatattgacaagtagtatgaga 420
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 561 agaaaaaaatgagatgcaagagcaaaaaaa-tgtctatcatattgacaagtagtatgaga 619
Query: 421 cagtaatcatactgtctcccatagacatgtctcccacagtcacgtcttactgggaaagca 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 cagtaatcatactgtctcccatagacatgtctcccacagtcacgtcttactgggaaagca 679
Query: 481 ggaggagaggggagcagtgagtgagtgtgagg 512
||||||||||||||||||| ||||||||||||
Sbjct: 680 ggaggagaggggagcagtgggtgagtgtgagg 711
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 512
Length of database: 911
Length adjustment: 10
Effective length of query: 502
Effective length of database: 901
Effective search space: 452302
Effective search space used: 452302
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
