BAC Information

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BAC

Clone NameMSMg01-186P10
Chromosome5 (Build37)
Map Location 27,008,304 - 27,008,421
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100038949, EG272714, EG545739, Speer4a, EG664804, LOC619645, LOC100039045, 5031410I06Rik, LOC434689, LOC664837, 4930584F24Rik
Downstream geneDpp6, B930011P16Rik, Speer4b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-186P10.T7 (MSMg01no186_p10.b1)MSMg01-186P10.TJ (MSMg01no186_p10.g1)
ACCAG378480AG378481
length773727
length of high quality
(start - end)
319 (46 - 364)122 (78 - 199)
definitionCHROMAT_FILE: MSMg01no186_p10.b1 PHD_FILE: MSMg01no186_p10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:02:07 2005CHROMAT_FILE: MSMg01no186_p10.g1 PHD_FILE: MSMg01no186_p10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:02:07 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTATTGTGGGCTAAGTGAATGACATGGGGAGTGGGGTCACTTGTTT
CAGGCCAGGCATCTAGCAGGGAGCAAGGAGACACCTACTGTCTCAGGTGG
GTTCCTGGGTGCTGGGGTCTCCAATTCACTCAACCTTACTAAGATTCCTG
GCACAGTCCATTGTCCCCCACACAAAGACCACCAGAAGAAAGTTACTTTC
AGTTCCGAAGGCCAGCAGAATACATTTACAGTTTTATATCAAGGATATAT
TAACTCTTTACCATTGTGTCATAACTTACTTCAAAACAGTCTTGAGTGTA
TGTTGATTCCTCGTAATATTACCTCTCGCCCCACTGTATTGACTTTGTTG
TGCGGATTGAACCACGCGCCCCGGAGATAACCATTTAGGAACATCTGAAT
CCACCCACAATCAAGATAAAAGCACAATAGTTAGTCAACCTATTCAGATT
TGGAGACCGCACATTCCTCACTTGGGTGTGTTATTCTCACCCATAAACCA
AGAGATTCATACAGCCTGTTAGCTTTGTATGGTACTTAGTACCAGAAAAG
CCGCCTTCCACCCCTCTATGTTTCTTCATTCAGTGTTTGTTCCCCCATTT
TGTTACACCTTTGTACTTTGGTATACCTCGACTGTCACTATTTATGTTCC
CCCTTATATATCTTAGCCCCCCCATTACGGCCCCCTTTTGTTAAGTTAAC
CTCTATTAAACCAATCTCTCATT
CGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTCTGTGCTGTGTGGCCACAGATA
CCTTCCAGACCTGAGGATCCAGTCCAGACAGAAGAGATTGATATTAGAGC
ATACATAGCTTCTCACTTAAGAAGGGGGATTGGGTTTTGGAAGTGNATGN
NCNNNNNNTTANNNNNNNNNNNNNGNNNGNNNNNGNNGNNNNNNNNNNNN
NNNNNNGGNNNCNNTTTTNNGTTTGTTGTGTTATGTTNTGTTTTGTTTNN
TTGGTTTTTTGTGGTTTTTTTTTTTTTTTTGTGTGGNGTGGGTGGCGGGG
TGNGTTTTTTTTTTTTTCCCCCCCCCCCCCCCGGGGGGGNGGGGGGGGGG
GGGGGGGTTTGTCCCCCCAAAAAAAAAAAAAATCCTGGGGGGGCCGGGCT
CTCCTCATACCGTATTATCTCCTTATAATGTTTCCGTATATCTCTTATAC
AATTATCCCCCCGACAATTACCCCGCGTATCCCCTCCATACCCTTCACTC
CCACCTCTGACCCCACGGCATCAAGTATTGTTTTTAGCCCGTGCCCCGTG
TGTTCAAATTATGTTTCTCAATTTTTGCCCCTATTCCCCCCCTCTACTTC
CCTTTTCCTTTATTGCCCCCTTTGCTGCCCCCCACTACCCGCATGCCACC
CGATTTTTACCTCCTTCTTGCCCCCGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no186_p10.g1 MSMg01no186_p10.g1 CHROMAT_FILE:
MSMg01no186_p10.g1 PHD_FILE: MSMg01no186_p10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:02:07 2005
         (122 letters)



>mm_chr5_27008104_27008625
          Length = 522

 Score =  228 bits (118), Expect = 8e-65
 Identities = 118/118 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   tctgtgctgtgtggccacagataccttccagacctgaggatccagtccagacagaagaga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tctgtgctgtgtggccacagataccttccagacctgaggatccagtccagacagaagaga 260

                                                                     
Query: 61  ttgatattagagcatacatagcttctcacttaagaagggggattgggttttggaagtg 118
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttgatattagagcatacatagcttctcacttaagaagggggattgggttttggaagtg 318


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 122
Length of database: 522
Length adjustment: 8
Effective length of query: 114
Effective length of database: 514
Effective search space:    58596
Effective search space used:    58596
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)