BAC Information

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BAC

Clone NameMSMg01-187P14
Chromosome5 (Build37)
Map Location 39,167,666 - 39,168,032
singlet/doubletsinglet
Overlap geneClnk
Upstream geneMsx1, Stx18, Nsg1, LOC100040397, Zfp509, Lyar, Tmem128, Otop1, Drd5, 4930487D11Rik, Slc2a9, Wdr1, 4930421P07Rik, 6820424L24Rik
Downstream geneLOC384174, Hs3st1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-187P14.T7 (MSMg01no187_p14.b1)MSMg01-187P14.TJ (MSMg01no187_p14.g1)
ACCAG379146AG379147
length743824
length of high quality
(start - end)
315 (46 - 360)173 (90 - 262)
definitionCHROMAT_FILE: MSMg01no187_p14.b1 PHD_FILE: MSMg01no187_p14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:03:27 2005CHROMAT_FILE: MSMg01no187_p14.g1 PHD_FILE: MSMg01no187_p14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:03:27 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCTTGTTGGGAGTCTACACTGTAAGACTGCAGTGCCTCCATGTTCC
AGATCCTCTAAATGTGCTCCCACTGGGGCAGAGTTTTAATACATAATTTG
GAGCATGGTCCTAAAGATGTACACCCATGGGCTCAGCAGTTAAGAGCCAC
AACCATCTGTAATGGGGTCTAGTGTCCTCTTCTGCTGTATCTGAAGAGAG
CAATGATGGTGTACTCATGTGCATAAAATAAGTAAGTCAATCTTAAAAAG
AAAAAGAAGTACACCTGTTTATGTCCCCTTGAGACTGGACGGACAGTCTA
GGTTCCCTGATTTGTTTCTGCCACCCTCGCCTCTTGCTCTCCTTTTCACC
CTATCCAGCTCTTCTCGCCCCAATCTATTAAATATTCTTTATTGCTGTGA
TACACACTGACAAAACACTGCTTGTGGGAGGAAAAGATTTAGTTCATCTT
ACAGATCGTAGTCTATGTGAAGGGAAGCCCGAGCAGCACCCCAGGGCAGG
ACTTGCAGCAGAGGAGTGCTGGCTAACTGGCTTGCACCAGGCTCATGGTC
AGCTACCTTTCTTAGACCTCCGAGACTACTGAATGAGGGGTGGCATCACC
CGCAGCGGGCTGGCCTCTCATACATCAATCATTCATTAAGCAAATTGCAC
CTACGGGGTTTGCTCAACAGGCCCAGTCTGAGGGAGGCATTTN
CTAAAGACCCNCCCACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCATGACTGGAA
AGCTGAGCTGACTAGGCTGAGGTGTACCAGCTAACAGAAATATAAAAACA
AAGATAGAGAGATAAAGACAGAAAGACAGATGGAAGGAAGGAAAGAAAGG
AAGAGAGAGAAAGAAAGAGAGAAAGGAAAGGAGGAAGAGAGGAAGGGAGG
AAGGGAGGAANNNNNNNNTNTNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTTTTTTTTTTTCNTTTTT
CNNNCCCNTNNNCCNNTTTTCTTTTTTTTTTCCCCCCCCTTCCTTCCCCT
TTTTCCTCTTTTTCTTCTCCTCTTTTTGGGGGCCCCCCCCTTTTTAATAA
TAACATTTTTCACCTAACCTTTTTCCCCTCCTTTCTATTTTCTCCCCTCC
TTTTCCCTATCTTCTCTTCTTCGTTTCTCGCTTCCTATCGTACTTTCCTC
CCTTTTTTACTTCTTCTCTTTCCTCCTCCTCCGTCCTTTCCCTCCCTTCC
TCCCTTCCCCTTCCTTACCCTTCCCTTTTCCCTTTATTCTTTTCTTCTTT
TCCCCTCCTCCTTTACTCTTTCCTCCACTACCTACTTTCTTCCCTTTCTC
CTCCCCCTTTTATTCGTCTCCTCCTCCTTTTCCCCTCTCTTTTTCCTTTC
TTTCCCTTCCCTCCATTCACATATTTTCCCCCTTCCTTTTCCTCCTTTTC
CCTTTATCCTCCTTTTCCCTATCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no187_p14.b1 MSMg01no187_p14.b1 CHROMAT_FILE:
MSMg01no187_p14.b1 PHD_FILE: MSMg01no187_p14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:03:27 2005
         (315 letters)



>mm_chr5_39167462_39168176
          Length = 715

 Score =  420 bits (217), Expect = e-122
 Identities = 303/367 (82%), Gaps = 56/367 (15%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccttgttgggagtctacactgtaagactgcagtgcctccatgttccagatcctct 64
           ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct: 205 gaattccttgttgggagtctacactataagactgcagtgcctccatgttccagatccttt 264

                                                                       
Query: 65  aaatgtgctcccactggggcagagttttaatacataatttggagcatggtcctaaagatg 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 265 aaatgtgctcccactggggcagagttttaatacataatttggagcatggtcttaaagatg 324

                                                                       
Query: 125 tacacccatgggctcagcagttaagagc-------------------------------- 152
           | |||| |||||||||||||||||||||                                
Sbjct: 325 tccacctatgggctcagcagttaagagcaccgactgctcttccagaggtcctgagttcaa 384

                                                                       
Query: 153 -----------caca------------accatctgtaatggggtctagtgtcctcttctg 189
                      ||||            |||||||||||||||||||| ||||||||||||
Sbjct: 385 ttcccagcaaccacatggcagctcacgaccatctgtaatggggtctaatgtcctcttctg 444

                                                                       
Query: 190 ctgtatctgaagagagcaatgatggtgtactcatgtgcataaaataagtaagtcaatctt 249
            ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gtgtgtctgaagagagcaatgatggtgtactcatgtgcataaaataagtaagtcaatctt 504

                                                                       
Query: 250 aaaaagaaaaagaagtacacctgtttatg-tccccttgagactggacggacagtctaggt 308
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 505 aaaaagaaaaagaagtacacctgtttatggtccccttgagactggacggacagtctaggt 564

                  
Query: 309 tccctga 315
           |||||||
Sbjct: 565 tccctga 571


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 315
Length of database: 715
Length adjustment: 9
Effective length of query: 306
Effective length of database: 706
Effective search space:   216036
Effective search space used:   216036
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)