BAC Information

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BAC

Clone NameMSMg01-188A18
Chromosome5 (Build37)
Map Location 16,588,770 - 16,589,028
singlet/doubletsinglet
Overlap genenone
Upstream geneCacna2d1, LOC668121, Hgf, EG668131
Downstream geneLOC626390, LOC668142, LOC100041749, LOC100041832, Speer4f, EG630927, Sema3c, Cd36, Gnat3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-188A18.T7 (MSMg01no188_a18.b1)MSMg01-188A18.TJ (MSMg01no188_a18.g1)
ACCAG379191AG379192
length841728
length of high quality
(start - end)		237 (80 - 316)287 (77 - 363)
definitionCHROMAT_FILE: MSMg01no188_a18.b1 PHD_FILE: MSMg01no188_a18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:03:33 2005CHROMAT_FILE: MSMg01no188_a18.g1 PHD_FILE: MSMg01no188_a18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:03:33 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTGAAGGTNNNTTNNTTTNNTTNNNTNNTTTTCTCTATXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCATAATTGCTAT
TGTTAATTTTCTTCTATTATTAAAGTAATACTCCCAAACTCTAAATAGCC
ATACTTATACTCAAACACACACACACACACACACACACACACACACACAC
ACACACACACACACACCCTCACTCACAGAGAGAGAGACAGAGACTGAGAG
AGACAGGGACCAACAGAGATGCTTAGAAAGATACNCAGACTAAAATATAA
GTCTCCTCTTTTCCTTCNNATATGATTGAACTACNGTGAAAAATTAGTGT
TCNATTATTTTAATTAATCTTAGTGTTAATGAAATTAGAATGATGTTTTT
TTTCCCCCCCCCCCCCCCCTTTTTTTTTTATTTTTTTTTTTTTTCCCCCC
CCCCCCCCCCAAAAAAAAAAAAAAAAAAAAACTTTTTTGGGGAATCCCCC
CCCCCNTTTTCTCTTTTTTTTTTTGNGNTACCCCCAACTTAAAAAAAATA
ATATTAAGANNNNNNNNCCNTCTTTCTTCCTCCTTTCTTAAAAAAAAATA
ACTNTCTTTCTTTTTTTCCCCCCACAACAAAAAAATGNTNTNTNCATTTT
NTCTCNTCCTCCTTTCTCTTCTTTCTCCCTCCCCTTTTTCTTTTTTTTTT
TTTTTTTCTCTCTTTCACTCATAAGAAAGAAAAAAAAAAAGCCTTCTAAA
ACTTATCNCNNCCNNNNNTNCNCNNCNCTTTNTTCAATTNNNCTTCCTTC
TCTTTTCTTTTCTCTTTTAATAAATAAGAAAAAAAAAAAAA

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCTTATATTCAGCCTTTCTAACATT
AAGAAAAAATTTAAAAATCTAATTTTAGTAAATTTTAATAATCTAAACTG
ACAGTTGAGGCTTGGTAATTAGCATGACATATATGTGGAAGTTAACAAAA
TACTACTTTTCATGATAATAGAAGTCTGAACCTGTTTTCCACATCAGTTT
TTTTCATCCTTGTTATTCCCTGTCTGGAATCAGACTCTTGTGGAATGGCA
AGTATTTGATCAATTCAGCTTTTTGTTTCTTTATGTTGATCTTTAGTTGG
GTTCTATGATATGTTTTCTTCCCCCACCCCCCCCCAAATGGTGTCCTGTA
TTTGAGAAAATCTGCCCCCCCCAATAAAGAATAGCACTGTCTGATGCGGA
GAACAGCAAATCTTTATAATAATATAGCATCAAGTGCACTATTTTGTAAC
TCCTTGACAAAAATAAAATTAGGAGAGCTATGCTTGAATCTACCTGCCTT
CACAGTAACTTTGTAAACATTCTATTATATCCCTCTTACCCTTATCGTTG
TAACAGCGTCAGACTATATTACTTCTCTATTGTCTCCTCTCCGCCCCCCT
TCCATTCTTGCCTTTTCTTCTTTTCTCCCCTCCTTCGCCTCCTTCTCCTT
TTCCCTTCGGTCTTTTCCTTTTCCTCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no188_a18.g1 MSMg01no188_a18.g1 CHROMAT_FILE:
MSMg01no188_a18.g1 PHD_FILE: MSMg01no188_a18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:03:33 2005
         (287 letters)



>mm_chr5_16588504_16589190
          Length = 687

 Score =  478 bits (247), Expect = e-139
 Identities = 256/259 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   cttatattcagcctttctaacattaagaaaaaatttaaaaatctaattttagtaaatttt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 525 cttatattcagcctttctaacattaagaaaaaatttaaaaatctaattttagtgaatttt 466

                                                                       
Query: 61  aataatctaaactgacagttgaggcttggtaattagcatgacatatatgtggaagttaac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 465 aataatctaaactgacagttgaggcttggtaattagcatgacatatatgtggaagttaac 406

                                                                       
Query: 121 aaaatactacttttcatgataatagaagtctgaacctgttttccacatcagtttttttca 180
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 405 aaaatactacttttcatgataatagaagtctgaacctgttttccaaatcagtttttttca 346

                                                                       
Query: 181 tccttgttattccctgtctggaatcagactcttgtggaatggcaagtatttgatcaattc 240
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 345 tccttgttattacctgtctggaatcagactcttgtggaatggcaagtatttgatcaattc 286

                              
Query: 241 agctttttgtttctttatg 259
           |||||||||||||||||||
Sbjct: 285 agctttttgtttctttatg 267


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 687
Length adjustment: 9
Effective length of query: 278
Effective length of database: 678
Effective search space:   188484
Effective search space used:   188484
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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