BAC Information

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BAC

Clone NameMSMg01-188I12
Chromosome5 (Build37)
Map Location 54,214,002 - 54,214,289
singlet/doubletsinglet
Overlap geneTbc1d19
Upstream geneAnapc4, Slc34a2, 2310045A20Rik, 1810013D10Rik, LOC100041198, LOC100041911, Rbpj, Cckar
Downstream geneStim2, EG666377, LOC666380
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-188I12.T7 (MSMg01no188_i12.b1)MSMg01-188I12.TJ (MSMg01no188_i12.g1)
ACCAG379523AG379524
length774728
length of high quality
(start - end)
290 (63 - 352)288 (77 - 364)
definitionCHROMAT_FILE: MSMg01no188_i12.b1 PHD_FILE: MSMg01no188_i12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:04:13 2005CHROMAT_FILE: MSMg01no188_i12.g1 PHD_FILE: MSMg01no188_i12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:04:13 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NTTCTCACCTTNNCACTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXCGCGGAATTCCTTGGTGATGAACAGCAGTGTGGACGTG
TAAACTAAATAAACCCTTTCCTCCCCAACTTTCTTCTTGGTCATGATGTT
TGTGCAGGAATAGAAACCCTAAGACAGTTATTGAACCATTACATAATTTT
AATCTTATCTCCTTGTGTATGCTGATTTTATTTACAATTTTTGAGATTAT
CATATCATTATAACATTCTCTCCTGTCTTTTTCTCTCTCCAATCCTTCCC
AAATAGACCTCATCTTATTTCATTCAAATTCATGTCCTCTTTCTTTTTAA
CTGTCGATATTTGAGTGTGTGTATTCCTATTTCTATACATACCACCCACT
CCATCCATATGTATGTGTATGTTTGCAGAGCCCACCCTGTAATATCGGAT
ATCCAGCCTGTCATACTTTTCCCTAGAAAAAATTATTTCTGATTTTAACA
TTCCTAATCTGCTTGTACGATTTTCTATTCTACCCTGAATCTCTTGTTTC
TATCCGTTTTTCTTGTTATTCATTCCATTGATTGTCGTCTTTTAACCATC
ATATTCTTTATTTCTATTATGCAAAAAATTTATCTTATTATACTATTTAT
ATATATATTTTACATTATCATTCTATACTTTTATCTTATTCTTTACCCCA
TGTTTAATCTATATCTCTTTACTAACAACACATAACAATTTCACCAACTC
ACCATAAATTACCACCACCCCCAA
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTGAATCATGGGGCAATCACATAG
AACCAAATAGAACCACCATACTAACAATTACTTTTAATTGGCTTTACTTG
ATCTGATGGTGTGCCAATACTTATAATTTACATAAAGCATCCCAGAGTCC
TCAGTGACTTTTAAGAGAGTGAGGAACCTGCGATTGAAAGCTTGAGAGTC
AGTGTTGTAGAGGAGTGAGCTCTAGAGGTCAGTTCTGAATCCACAACAAT
GACAGACAGGCGAGGGAGAGCTACTCAGAGCGACACGGAGCTAGGCCTTG
GATACGCGAGAACTTGATAGAGCTCGACACAGACGGGACCCCGAGGAAAG
CAAATTCAGAGACACAGTAACTCTTATTAAAGGGCTCTCAGCAAAAGGGA
TCAAGCTTACTGTGTGGCCTGAGGTGGCGGGGTTAGTGCGAGCACTTACT
GTGTGGCCAAGTCAGTGCTGCCAGGCGCGCTGGCACAGCGATGTAAGGTA
AGGGAGGCATCACTAAGGTACGAATATAAACATTCCTAAGCTCAAAGCAG
TTCAGCTTCCATGGCGTATTTTCTCAGACAGATGATCTTTGTGCAGAGGG
TAGTGGCTCCAAGTGCTTAGTGGTACAGCAGAGTTTCCTATAGACCCTTT
TTATTCCCAACTTTCTGCTATTCCCAGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no188_i12.g1 MSMg01no188_i12.g1 CHROMAT_FILE:
MSMg01no188_i12.g1 PHD_FILE: MSMg01no188_i12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:04:13 2005
         (288 letters)



>mm_chr5_54213802_54214489
          Length = 688

 Score =  534 bits (276), Expect = e-156
 Identities = 285/288 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttgaatcatggggcaatcacatagaaccaaatagaaccaccatactaacaattactttta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttgaatcatggggcaatcacatagaaccaaatagaaccaccatactaacaattactttta 260

                                                                       
Query: 61  attggctttacttgatctgatggtgtgccaatacttataatttacataaagcatcccaga 120
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 261 attggctttacttgatctgatggtgtgccaatacttataatttacacaaagcatcccaga 320

                                                                       
Query: 121 gtcctcagtgacttttaagagagtgaggaacctgcgattgaaagcttgagagtcagtgtt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtcctcagtgacttttaagagagtgaggaacctgcgattgaaagcttgagagtcagtgtt 380

                                                                       
Query: 181 gtagaggagtgagctctagaggtcagttctgaatccacaacaatgacagacaggcgaggg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtagaggagtgagctctagaggtcagttctgaatccacaacaatgacagacaggcgaggg 440

                                                           
Query: 241 agagctactcagagcgacacggagctaggccttggatacgcgagaact 288
           |||||||||||||| |||||||||||||||||||||||| ||||||||
Sbjct: 441 agagctactcagagtgacacggagctaggccttggatactcgagaact 488


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 288
Length of database: 688
Length adjustment: 9
Effective length of query: 279
Effective length of database: 679
Effective search space:   189441
Effective search space used:   189441
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)