Query= MSMg01no188_n21.b1 MSMg01no188_n21.b1 CHROMAT_FILE:
MSMg01no188_n21.b1 PHD_FILE: MSMg01no188_n21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:04:39 2005
(320 letters)
>mm_chr5_90227579_90228299
Length = 721
Score = 532 bits (275), Expect = e-155
Identities = 307/321 (95%), Gaps = 7/321 (2%)
Strand = Plus / Minus
Query: 4 ggaattctcaggtactggtatccatttggtaaagtctggctggacctggaatcgcagcct 63
||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct: 521 ggaattctcaggtactggtatccatttggtaaagtttggctggacctggagtcgcagcct 462
Query: 64 gaactgcagtctgttcttgtacttagacctaggaacatttgcatgcattgatgagagcag 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 461 gaactgcagtctgttcttgtacttagacctaggaacatttgcatgcattgatgagaggag 402
Query: 124 agccaggcaagaatcaggaatatgagagaaacagaagctaacactcatggttcgaatgac 183
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 401 agccaggcaagagtcaggaatatgagagaaacagaagctaacactcatggttcgaatgac 342
Query: 184 tttagactgcatttatttcttcattatattgtgtgagccatgaaaaggctctttcactta 243
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 341 tttagactgcatttattttttcattatattgtgtgagccatgaaaaggctctttcactta 282
Query: 244 tgaaaattattgtttgtttctttccttggtatgtata----tttttaattgtaggtttta 299
||||||||||||||||||||||| ||||||||||| | || ||||||||||||||
Sbjct: 281 tgaaaattattgtttgtttcttttcttggtatgtaaaaacatt---aattgtaggtttta 225
Query: 300 aatttgacttggcagattggc 320
|||||||||||||||||||||
Sbjct: 224 aatttgacttggcagattggc 204
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 320
Length of database: 721
Length adjustment: 9
Effective length of query: 311
Effective length of database: 712
Effective search space: 221432
Effective search space used: 221432
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no188_n21.g1 MSMg01no188_n21.g1 CHROMAT_FILE:
MSMg01no188_n21.g1 PHD_FILE: MSMg01no188_n21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:04:39 2005
(349 letters)
>mm_chr5_90084804_90085552
Length = 749
Score = 659 bits (341), Expect = 0.0
Identities = 347/349 (99%)
Strand = Plus / Plus
Query: 1 ctggacattagtcctttatagcaatggttccaaacctctgggtcacaacccttttggcag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctggacattagtcctttatagcaatggttccaaacctctgggtcacaacccttttggcag 260
Query: 61 gggttgaacaacccctttcacaggggtcacctaagatcatcacaaacagatttttagatc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gggttgaacaacccctttcacaggggtcacctaagatcatcacaaacagatttttagatc 320
Query: 121 acaattcaaaacagtatcaaaattacagttatgagatagtaacaaaaataatgttgtggt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acaattcaaaacagtatcaaaattacagttatgagatagtaacaaaaataatgttgtggt 380
Query: 181 tgggggtcaccacaacataagaaactatattaaagggtcacagcattaggaaggttgaga 240
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgggggtcaccacaacataaggaactatattaaagggtcacagcattaggaaggttgaga 440
Query: 241 tccatgctctacgggctatataactgctataaagagcctccccttctccatggacttcct 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tccatgctctacgggctatataactgctataaagagcctccccttctccatggacttcct 500
Query: 301 actaggttgatttctttttccttttgatgtacataagacatttttgtgt 349
||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 501 actaggttgatttgtttttccttttgatgtacataagacatttttgtgt 549
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 349
Length of database: 749
Length adjustment: 9
Effective length of query: 340
Effective length of database: 740
Effective search space: 251600
Effective search space used: 251600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
