Query= MSMg01no189_b24.b1 MSMg01no189_b24.b1 CHROMAT_FILE:
MSMg01no189_b24.b1 PHD_FILE: MSMg01no189_b24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:05:01 2005
(584 letters)
>mm_chr5_88045947_88046930
Length = 984
Score = 1065 bits (551), Expect = 0.0
Identities = 569/575 (98%), Gaps = 1/575 (0%)
Strand = Plus / Plus
Query: 5 gaattctttggcctttcggataggtgcttttatagttgtttcagagaggaaatctggaac 64
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctttggcctttaggataggtgcttttatagttgtttcagagaggaaatctggaac 264
Query: 65 tctgtcttggagaatgacccccttttcccatagttttgtaataggaccagagttgagatt 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tctgtcttggagaatgacccccttttcccatagttttgtaataggaccagagttgagatt 324
Query: 125 ccttgtcgaaggcttaaatttacttagatctaagggaacccacaaccaaacactaggtag 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ccttgtcgaaggcttaaatttacttagatctaagggaacccacaaccaaacactaggtag 384
Query: 185 atccaggagaaaacccacaaagagggaagtgttgtaggaaccagagaagttgaggacacc 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 atccaggagaaaacccacaaagagggaagtgttgtaggaaccagagaagttgaggacacc 444
Query: 245 aagagaacacagctcactaaatcaaataattagtgttcataggggctcacagacagtgaa 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 aagagaacacagctcactaaatcaaataattagtgttcataggggctcacagacagtgaa 504
Query: 305 gcaacaatcatggaacttatatgtatctaagctatttcctctccatatatgttacacttg 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 gcaacaatcatggaacttatatgtatctaagctatttcctctccatatatgttacacttg 564
Query: 365 tgtagcttgatatccttgtatgactcctaacagtcatacaaggttgtattgactcttttg 424
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tgtagcttgatattcttgtatgactcctaacagtcatacaaggttgtattgactcttttt 624
Query: 425 tctgctgttggtatatttttgttcctactgggatgccttatccagtcttgaagttttgtg 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 tctgctgttggtatatttttgttcctactgggatgccttatccagtcttgaagttttgtg 684
Query: 485 cttagtcttaacttgttatgctgtgttccctaaaagtctgctcttttctgaagggaaaag 544
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 685 cttagtcttaacttgttatgctgtgttccctaaaagcctgctcttttctgaagggaaaag 744
Query: 545 gaggcggagtggatataggggagagaaagtgaggg 579
|||| |||||||||||||||||||||| |||||||
Sbjct: 745 gaggaggagtggatataggggagagaa-gtgaggg 778
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 584
Length of database: 984
Length adjustment: 10
Effective length of query: 574
Effective length of database: 974
Effective search space: 559076
Effective search space used: 559076
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no189_b24.g1 MSMg01no189_b24.g1 CHROMAT_FILE:
MSMg01no189_b24.g1 PHD_FILE: MSMg01no189_b24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:05:01 2005
(291 letters)
>mm_chr5_88136408_88137098
Length = 691
Score = 555 bits (287), Expect = e-162
Identities = 290/291 (99%)
Strand = Plus / Minus
Query: 1 ctcctctccttctagttttccttgtctctgcctgctctacccctgcacttcaccactatt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 636 ctcctctccttctagttttccttgtctctgcctgctctacccctgcacttcaccactatt 577
Query: 61 cctgactatttaaactggagctgaggatcacatcacatgcaggtcctcatgcttgtatat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 576 cctgactatttaaactggagctgaggatcacatcacatgcaggtcctcatgcttgtatat 517
Query: 121 aaacacttcaccatcaaactatctcatcgacttccattagatccaacttgaaatctatac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 516 aaacacttcaccatcaaactatctcatcgacttccattagatccaacttgaaatctatac 457
Query: 181 ttaaataaaaatatgcatatccacttctctttcactaaaccctgtgctctttgcaattgt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 ttaaataaaaatatgcatatccacttctctttcactaaaccctgtgctctttgcaattgt 397
Query: 241 catcgccttactggcatacattagtaaaggccagaggtgtaactccagtga 291
|||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 396 catcgccttactggcatacattagtaaaggtcagaggtgtaactccagtga 346
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 291
Length of database: 691
Length adjustment: 9
Effective length of query: 282
Effective length of database: 682
Effective search space: 192324
Effective search space used: 192324
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
