BAC Information

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BAC

Clone NameMSMg01-189F05
Chromosome5 (Build37)
Map Location 55,355,533 - 55,355,889
singlet/doubletsinglet
Overlap genenone
Upstream geneStim2, EG666377, LOC666380
Downstream geneEG666405
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-189F05.T7 (MSMg01no189_f05.b1)MSMg01-189F05.TJ (MSMg01no189_f05.g1)
ACCAG380048AG380049
length733727
length of high quality
(start - end)
689 (45 - 733)356 (129 - 484)
definitionCHROMAT_FILE: MSMg01no189_f05.b1 PHD_FILE: MSMg01no189_f05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:05:17 2005CHROMAT_FILE: MSMg01no189_f05.g1 PHD_FILE: MSMg01no189_f05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:05:17 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTCAACCGAGGAATACCAAGAGGTCAAGAAGCACCTAAAGAAATGCT
CAACATTCTTAGTCATTGGGGAAATGCAAAGCAAAACAACCCTGAGATAC
CACCTCACACCAATTAGAATGGCTAAGATCAAAAATTCAGGTGAAAACGG
ATAATAGTGAGGATGTGGAGAAAGAGGAACATTTATTTGTTTTCGGTGAG
ATTGTAAGCTGGAACAACCACTCTTGAAATCAGTCTGGTGGTCCCTCAGA
AAATTGGAGATAGTTCTATCTGAGGACCCAGATATACCACTTCTGGGCGT
ATATCCCTAAAATACTCCACCATATGACAAGGACACATGCTCCACTATGT
TCATAGCTGCCTTATTTATAATAGCCAGAAGCTGGAAAGAACCCAGATGT
TCTTCTACAGAGGAATGGATACAGAAAATATGGTACATTTACACAATGGA
GTTCTACTCAGCTATTAAAAACAATGAATTTATAAAATTCTTAGGCAAAT
GGGTGGAACTAGAAAATATCATCTTGAGTGAGGTAACTAAGTCACAAAAG
AACATATATGGTGTGAAGTCACTGATATGTGGATAATAGCCCAGAAGCTT
GGAATACCCAAGATACAATTCATAGACCACATGAAGCTGAAGAAGAAGGA
AGACCAAAGTGTGGATACTTTGGTCCTTCTTAG
AGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTAATGTCAGTTTAACTTTATAGG
TTAAAAATGATGACATTATATATAACCATATCTTGATAAAAGTATTCAAT
GATAATTTTAAGAACATGTATGTCACCTTAAGAGCACAGTTCCAAATTAA
TTGAGCAGTAAAAAAAAAAAAAGACAATTTATGACTATTTAAATTATTCT
GAAGAAAGTAAGAGAATATTCAGTATGGAGTGAATCATTGCAGGACAGCT
TGGAAATCCATTTTCTCATACTTTAGGTATACTTACTCATATTTGTGTTA
CCATCCAAAATCAAAATGACCCTTTCAAACATAATTTCTTTTAAGCAGCT
CTATTCTTTTTGCTTTGCTGAAAAAGCATATAAACAGCGTGATGCCATCA
TGCTTATTCTACATACTAAACATGACCCTGATAGCACTGACGTATACTCA
AAAAAATAAAAAACTAACAATATTACTATAAGCATGTCCCACTTTTGAGA
ATATATGTAAGGAACTATTAACCTATTACATGGAACTTACTTAAACCCAT
CTTGTTCGTATGCATCTCTTAACTAAACATATATTTAATGTTTATGCCTG
TATTGATATCTTTGACAATTTATATGATTTAACCGAAAAAGCAATTTGCC
TCCCCTTTTTAAAAAGTAATTGCTGTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no189_f05.g1 MSMg01no189_f05.g1 CHROMAT_FILE:
MSMg01no189_f05.g1 PHD_FILE: MSMg01no189_f05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:05:17 2005
         (356 letters)



>mm_chr5_55355333_55356089
          Length = 757

 Score =  644 bits (333), Expect = 0.0
 Identities = 351/357 (98%), Gaps = 1/357 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tatcttgataaaagtattcaatgataattttaagaacatgtatgtcaccttaagagcaca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 tatcttgataaaagtattcaatgataattttaagaacatgtatgtcaccttaagagcaca 498

                                                                       
Query: 61  gttccaaattaattgagcagt-aaaaaaaaaaaaagacaatttatgactatttaaattat 119
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 497 gttccaaattaattgagcagtaaaaaaaaaaaaaagacaatttatgactatttaaattat 438

                                                                       
Query: 120 tctgaagaaagtaagagaatattcagtatggagtgaatcattgcaggacagcttggaaat 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 tctgaagaaagtaagagaatattcagtatggagtgaatcattgcaggacagcttggaaat 378

                                                                       
Query: 180 ccattttctcatactttaggtatacttactcatatttgtgttaccatccaaaatcaaaat 239
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 377 ccattttctcatactttagggatacttactcatatttgtgttaccatccaaaatcaaaat 318

                                                                       
Query: 240 gaccctttcaaacataatttcttttaagcagctctattctttttgctttgctgaaaaagc 299
           ||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||
Sbjct: 317 gaccctttcaaacataatttcttttaagcagttctattctttttgttttgctgaaaaagc 258

                                                                    
Query: 300 atataaacagcgtgatgccatcatgcttattctacatactaaacatgaccctgatag 356
           ||||||||||||||||||||||| | |||||||||||||||||||||||||||||||
Sbjct: 257 atataaacagcgtgatgccatcaagtttattctacatactaaacatgaccctgatag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 356
Length of database: 757
Length adjustment: 9
Effective length of query: 347
Effective length of database: 748
Effective search space:   259556
Effective search space used:   259556
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)