BAC Information

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BAC

Clone NameMSMg01-189L20
Chromosome5 (Build37)
Map Location 74,804,003 - 74,804,310
singlet/doubletsinglet
Overlap genenone
Upstream geneC130090K23Rik, LOC627733, Dcun1d4, BC031901, Sgcb, Spata18, Usp46, 2700023E23Rik, Rasl11b
Downstream geneScfd2, Fip1l1, Lnx1, EG619945, Chic2, Gsh2, LOC100039083, Olfr1401-ps1, Pdgfra, LOC100039125, LOC100039143
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-189L20.T7 (MSMg01no189_l20.b1)MSMg01-189L20.TJ (MSMg01no189_l20.g1)
ACCAG380321AG380322
length729769
length of high quality
(start - end)
315 (46 - 360)302 (398 - 699)
definitionCHROMAT_FILE: MSMg01no189_l20.b1 PHD_FILE: MSMg01no189_l20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:05:47 2005CHROMAT_FILE: MSMg01no189_l20.g1 PHD_FILE: MSMg01no189_l20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:05:47 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTCCATTCAGACATATGACCAGCAACTAAACTCAATAGAACTACAG
CTAAAATATTTTCCTTATAGACTATGGTTGAACCTTCTGAGCCATTTCCA
TTTGTCCCTGTGCATTTGCACATGGCTATCTCTTTATATAGAATACACTT
TTCCCTTTTCTCCACTACTCAAGTAAGATCTTCTCTGGCATCTGGTTACC
ATTTGGGTTAAACAAGCCTTCAACCCTACTCTTCCTGCACTGGATCTACA
CTGTTGTGTGCTGTCATCCTCCACCCAGTTGACTGAGAGATTTCAACTTG
TCTTGGAGTCCTCTAAATCACCCGCGCAGCCCTGATAATCCTGCATACAC
ACCCTATCTTCTCTATACTTCAGCTACTGCCTGTGTTGCAACTATCATTA
CTTCCAGCCATGATCTGACTCATTCTAGAATAAATGAATCAATGAATGAA
TGAATGAATCCACTTAAACTTACTTGGTCTTAGTTAATGGCAGGCATGCC
TTCTACCTTTTTGGCCTATTAACTGCTCAGTCCTGTCCATCATAATTCTC
TTTGCACACATTGTGGTTAAACCTTCTGCACCATTTCCATTTGTCCCCAT
AATTACACATGTGTTTCTCTCTGTAGAGAATGTACTTTCCCTTCCCACCC
TTCATCTCAAGACTCAACTCTAATATTGT
NNAAAATCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCTGGTAGAGAGATCCT
GTAGTAGAGGTATTTGTCAGTTTTATTCACACTACGACCTGTTACCTGGA
ATAGTAGCTAGAACTTGAGATACTGGATGAAAAACCAAATGAGTGAATGC
ATGCATGCATGAATGAATGGTGGCAGATGATGCATTTGCACATCCAGAGA
AGGATCTGGGGATAAGGTGAGCTATGGACTTAGAGACCGTCAAGCCAAAC
AACATGAACATTCTTGTTGAATATTTAAAGTATAGTCATTGTGTTAAGAA
GATATTGTAAGAAGGAGGCTCTGTATTTTATTACCCCCACCCCCGCGAAA
GATGTTTGCTACCAAGCCTGACAACCTTATAGATCCCTTACAGACAAGGT
GAAGAATGGATTTTTGCAGGCTGAAATATCCTCTGACCTCTGTCCTCCAC
AGAAGTGCCATAGCACATGTGTGTGCACACTCTCACCCAGAATAAATAAA
AAACAAGGCATATAGTCTAAAAAAATAAAAGTAAATTGTTAAAAAAAGTG
CCCTGCCATCTTCCTTCTGAGCCCAGCGGAGGCCATTAAGGGCTCCAGAG
TGCTCTCCATGCATCAGGACCTCGGGATCACCTCAGGATCACGGGTGAAT
GTAACACAACATCAGCTCCAAGGAATCGCAGAGGATCTTGTGCCTGCAGG
AACAGGGACAAAGGATCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no189_l20.b1 MSMg01no189_l20.b1 CHROMAT_FILE:
MSMg01no189_l20.b1 PHD_FILE: MSMg01no189_l20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:05:47 2005
         (315 letters)



>mm_chr5_74803796_74804510
          Length = 715

 Score =  534 bits (276), Expect = e-156
 Identities = 300/308 (97%)
 Strand = Plus / Plus

                                                                       
Query: 8   ttctccattcagacatatgaccagcaactaaactcaatagaactacagctaaaatatttt 67
           ||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||
Sbjct: 208 ttctccattcagacatatgaccagcaaataaactcaatagaattacagctaaaatatttt 267

                                                                       
Query: 68  ccttatagactatggttgaaccttctgagccatttccatttgtccctgtgcatttgcaca 127
           ||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 268 ccttatagactgtggttgaaccttctgagccatttctatttgtccctgtgcatttgcaca 327

                                                                       
Query: 128 tggctatctctttatatagaatacacttttcccttttctccactactcaagtaagatctt 187
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 328 tggctatctctttatatagaatacacttttcccttttctccactactcaagtaatatctt 387

                                                                       
Query: 188 ctctggcatctggttaccatttgggttaaacaagccttcaaccctactcttcctgcactg 247
           ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 388 ctctgacatctggttaccatttgggttaaacaagccttcaaccctactcttcctgctctg 447

                                                                       
Query: 248 gatctacactgttgtgtgctgtcatcctccacccagttgactgagagatttcaacttgtc 307
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 448 gatctacactgttgtgtgctgtcatcctccacccagttgactgagagatttcgacttgtc 507

                   
Query: 308 ttggagtc 315
           ||||||||
Sbjct: 508 ttggagtc 515


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 315
Length of database: 715
Length adjustment: 9
Effective length of query: 306
Effective length of database: 706
Effective search space:   216036
Effective search space used:   216036
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)