BAC Information

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BAC

Clone NameMSMg01-189M06
Chromosome5 (Build37)
Map Location 84,781,949 - 84,782,273
singlet/doubletsinglet
Overlap geneEpha5
Upstream geneSrd5a2l2, LOC100039608, LOC231368, LOC100039489
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-189M06.T7 (MSMg01no189_m06.b1)MSMg01-189M06.TJ (MSMg01no189_m06.g1)
ACCAG380337AG380338
length725731
length of high quality
(start - end)
317 (46 - 362)287 (77 - 363)
definitionCHROMAT_FILE: MSMg01no189_m06.b1 PHD_FILE: MSMg01no189_m06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:05:49 2005CHROMAT_FILE: MSMg01no189_m06.g1 PHD_FILE: MSMg01no189_m06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:05:49 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTTATCCCATTTAATGGGGTCAAGCTTAAATAAAGCTCTTTACCCA
GAAAATAGGAGCTTAGCATTCCAAGTACAAAACTGTAACTCTTTTTCTCT
TTTGGTTGTTGTTGCTTTTACTGTTATTGTTGTTGTTGTTGTTGTTGTTG
TTATTAAGAGGTCAGCTCGGGAACCTTAGAAAATTCCACGGGACCCCTCC
CCTCTTGGAAGCAAAAGGTCATAGGCACCCTTCCCCTCTGGAAGGGAGGG
GCTAATTACATTCCTCAGACCACAGGAAGGAGGGACCGACCACCTACCTC
ACTTCCTATAGACTAATCAGTTTACCACCCACACTGTTGTGCCAATCATG
TTGTGCCTAATGGATGCTGCCCCGAGAACTGTATAAAGGCTCGCTGGATG
GGCTGTGTGTGCTCCTTCTCTCTCTCCATGTGCAGGGCGACCCCAACATG
TGGAAACAGTAAATTCCCTTGCTTTTTACATTGATTCCTGTCTCTGTGTT
GCTCACTAAGGGAGTCCCTGGAAAGCTAAGGCTTGCCAGAGTCTTAGAGT
TGTTGATGCTGATGTTGTTGCTGATGCTGCTGATCTTGGCGCTTTTGTTG
TTGCTGATTGTCATTCGCATTCTCATCAATGCTTTCATTCAAAATCCATC
CTAACATTATAATCTTCTGCTAAGG
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAAGGGTATTACCTACTTTCTTTTC
TAGGTTCAGTGTATCTGGTTTTATGTTGACAGTTGATCCAAGAAACAAAG
AGAATAATACAAAGAGAAAATGAAACTCAAAGTTGATTCTTTGAGAAAAC
CAACAAGATAGACCAACTTTTATCAAAATAAACTAAAATATTGGGAAATA
ATAGCCATATTAACACGATAAGAAACAGAAAGAGAGATATAACAATAGAC
ACCAAGGAAAACAATATATTCATAAGAACATATTTTAAAAACCTGTGTTC
CACTAAATTATTATTTTTAACCCCCCCGCCCAACTTTCTTGATAGGTACC
ACTTACCAAAATTAAATTAAGATTAGATAAATAGTTTATAGTATAACCCC
TAGTTAAATAGGAACAGTCATTAAGAATCTCCCAACCAAAGAATTTGTCC
AATAGCAGATGGTTTTAGCACCGAATTTTACCAGACATTCAAAGAACTGT
TAATGCCAATATTCCTCAAATTATTTCACAAGCTACAGAGACAGTAAAAA
TTGTCTGATTTATTTTATGAGGCTACAGTTACCTTGATACCCAAAGTATG
TAAAGCCTTACCAAAAAGATAATTAAAGACCAATTTTTCTTATTAACACA
CATACAATGTTCAATGAAACACTCGGAAATN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no189_m06.b1 MSMg01no189_m06.b1 CHROMAT_FILE:
MSMg01no189_m06.b1 PHD_FILE: MSMg01no189_m06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:05:49 2005
         (317 letters)



>mm_chr5_84781745_84782461
          Length = 717

 Score =  563 bits (291), Expect = e-165
 Identities = 311/325 (95%), Gaps = 12/325 (3%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcttatcccatttaatggggtcaagcttaaataaagctctttacccagaaaatagg 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcttatcccatttaatggggtcaagcttaaataaagctctttacccagaaaatagg 264

                                                                       
Query: 65  agcttagcattccaagtacaaaactgtaactctttttctcttttggttgttgttgctttt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 agcttagcattccaagtacaaaactgtaactctttttctcttttggttgttgttgctttt 324

                                                                       
Query: 125 ac------------tgttattgttgttgttgttgttgttgttgttattaagaggtcagct 172
           ||            |||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 actgttgttgttgttgttgttgttgttgttgttgttgttgttgttattaagaggtcagct 384

                                                                       
Query: 173 cgggaaccttagaaaattccacgggacccctcccctcttggaagcaaaaggtcataggca 232
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 cgggaaccttagaaaattccacgggacccctcccctcttggaagcaaaaggtcataggca 444

                                                                       
Query: 233 cccttcccctctggaagggaggggctaattacattcctcagaccacaggaaggagggacc 292
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 cccctcccctctggaagggaggggctaattacattcctcagaccacaggaaggagggacc 504

                                    
Query: 293 gaccacctacctcacttcctataga 317
           |||||||||||||||||||||||||
Sbjct: 505 gaccacctacctcacttcctataga 529


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 317
Length of database: 717
Length adjustment: 9
Effective length of query: 308
Effective length of database: 708
Effective search space:   218064
Effective search space used:   218064
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)