Query= MSMg01no190_n01.b1 MSMg01no190_n01.b1 CHROMAT_FILE:
MSMg01no190_n01.b1 PHD_FILE: MSMg01no190_n01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:07:12 2005
(658 letters)
>mm_chr5_38092024_38093081
Length = 1058
Score = 1160 bits (600), Expect = 0.0
Identities = 642/664 (96%), Gaps = 13/664 (1%)
Strand = Plus / Minus
Query: 4 ggaattctacatgcacaaaagaggaagataacacagtaacaagagtatagaagcaaacaa 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 773 ggaattctacatgcacaaaagaggaagataacacagtaacaagagtatagaagcaaacaa 714
Query: 64 gtcttagcagaagtgtagataatcgagtcagaaaagaatcaaacgttagaaaaacaataa 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 713 gtcttagcagaagtgtagataatcgagtcagaaaagaatcaaacgttagaaaaacaataa 654
Query: 124 gattatgaccctggatgtaaatggtcttagtgactcaaatgaaaagatgcagacaggatg 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 653 gattatgaccctggatgtaaatggtcttagtgactcaaatgaaaagatgcagacaggatg 594
Query: 184 ggtggctttaaaagcaagatccaacttgcttccagcaagaaccatacctcactcacaaat 243
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 593 ggtggctttaaaagcaagatccaacttgcttccagtaagaaccatacctcactcacaaat 534
Query: 244 gcctagatacagagggagaataatgaaaacggtgttcttggtacacagaacatggaagca 303
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 533 gcctagatacagagggagaataatgaaaacggtgttcttggtacacagaacatggaagta 474
Query: 304 gacaggagttatgtctggaaaacgaaatttcaggccaaataaattttcagctacttatct 363
|||||||||||||||||||||| ||||||||||||||| ||| |||||||||||||||||
Sbjct: 473 gacaggagttatgtctggaaaaggaaatttcaggccaagtaatttttcagctacttatct 414
Query: 364 gacagaggattaatatacacaaagtgcaaagatctcaagttcagcactgctgtgtgagtg 423
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 413 aacagaggattaatatacacaaagtgcaaagatctcaagttcagcactgctgtgtgagtg 354
Query: 424 aggtaaggacctctggccttgtaggactggctgtgtgtgaaactctacatagg------- 476
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 353 aggtaaggacctctggccttgtaggactggctgtgtgtgaaactctacataggagcttgt 294
Query: 477 ------acaaaacttcttttgatagaatctctaaaatagaatagcaaacagatgagaaat 530
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 293 gaatacacaaaacttcttttgatagaatctctaaaatagaatagcaaacagatgagaaac 234
Query: 531 gacgataagaacaacccctccccaacccaaaaccaaccaaacaaaaaataactaggcatg 590
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 233 gacgataagaacaacccctccccaacccaaaaccaaccaaacaaaaaataactaggcatg 174
Query: 591 gctaagacagaaccaggtattgggaaactgggagaggggagtgagagtcagcttaggggg 650
||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 173 gctaaaacagaaccaggtattgggaaactgggagaggggagtgagagtcagctcaggggg 114
Query: 651 taaa 654
||||
Sbjct: 113 taaa 110
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 658
Length of database: 1058
Length adjustment: 10
Effective length of query: 648
Effective length of database: 1048
Effective search space: 679104
Effective search space used: 679104
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no190_n01.g1 MSMg01no190_n01.g1 CHROMAT_FILE:
MSMg01no190_n01.g1 PHD_FILE: MSMg01no190_n01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:07:12 2005
(290 letters)
>mm_chr5_38047232_38047921
Length = 690
Score = 474 bits (245), Expect = e-138
Identities = 275/289 (95%), Gaps = 7/289 (2%)
Strand = Plus / Plus
Query: 1 attatcccacagttcaagaggccaaaaggccagagccaaagggccagcacccctgtgcca 60
|||||||||| |||||||||||||||||||||||||||||| ||||||| ||||||||
Sbjct: 201 attatcccacggttcaagaggccaaaaggccagagccaaagtgccagcaggtctgtgcca 260
Query: 61 tttataaagaccctgggggtccttccctaactccataaggacatcaagcaggtgttttag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tttataaagaccctgggggtccttccctaactccataaggacatcaagcaggtgttttag 320
Query: 121 gatccctcagtgagtggtagtgaaccaagagtgcttgtttctgattggtaggaaatcatt 180
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gatccctcagtgaatggtagtgaaccaagagtgcttgtttctgattggtaggaaatcatt 380
Query: 181 atgcatctgcatcagactatctgctctctggagatgttccagttctcaggacaataattc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atgcatctgcatcagactatctgctctctggagatgttccagttctcaggacaataattc 440
Query: 241 aaggggaagctttccagatacctaagccacaaatgtttcagctgagtga 289
||||||||||||||| |||| ||||||||||||||||||||||
Sbjct: 441 aaggggaagctttcc-------taagtcacaaatgtttcagctgagtga 482
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 290
Length of database: 690
Length adjustment: 9
Effective length of query: 281
Effective length of database: 681
Effective search space: 191361
Effective search space used: 191361
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
