Query= MSMg01no190_o22.b1 MSMg01no190_o22.b1 CHROMAT_FILE:
MSMg01no190_o22.b1 PHD_FILE: MSMg01no190_o22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:07:21 2005
(317 letters)
>mm_chr5_4972191_4972907
Length = 717
Score = 576 bits (298), Expect = e-169
Identities = 310/314 (98%)
Strand = Plus / Minus
Query: 4 ggaattcagcaagagtgtcattctaagctacaaatgatggttgatgagctgaggagatac 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 579 ggaattcagcaagagtgtcattctaagctacaaatgatggttgatgagctgaggagatac 520
Query: 64 ctagtcagtaaagtgcccaccatgcaagggcaaagaactgagttcagatccccagagcac 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 519 ctagtcagtaaagtgcccaccatgcaagggcaaagaactgagttcagatccccagagcac 460
Query: 124 atggaataagcacagtgggtcacaatgtacctagttacaggtgggtgagggctgagagct 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 459 atggaataagcacagtgggtcacaatgtacctagttacaggtgggtgagggctgagagct 400
Query: 184 cagataggctgtcctcagagctaactaaccaatcagtgagaagttgttttaaaaactaat 243
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 399 cagataggctgtcctcagagctaactaaccaatcagtgagaagttgttttaaaaactagt 340
Query: 244 atggaggagctgaatagatagctgagcagttaagagcactgattgctcatccagaggtcc 303
||||||||||||||||||| |||||||||||||||||||||| ||||| |||||||||||
Sbjct: 339 atggaggagctgaatagatggctgagcagttaagagcactgactgctcttccagaggtcc 280
Query: 304 tgagttcaaatccc 317
||||||||||||||
Sbjct: 279 tgagttcaaatccc 266
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 317
Length of database: 717
Length adjustment: 9
Effective length of query: 308
Effective length of database: 708
Effective search space: 218064
Effective search space used: 218064
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no190_o22.g1 MSMg01no190_o22.g1 CHROMAT_FILE:
MSMg01no190_o22.g1 PHD_FILE: MSMg01no190_o22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:07:21 2005
(280 letters)
>mm_chr5_4856431_4857110
Length = 680
Score = 526 bits (272), Expect = e-154
Identities = 278/280 (99%)
Strand = Plus / Plus
Query: 1 aaagacataccatcacagcatcataatatgcacaattgtaagtggagtcctaccgaactc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaagacataccatcacagcatcataatatgcacaattgtaagtggagtcctaccgaactc 260
Query: 61 tggagtcaggggaacaggggaatcagaaccaactcccacccctgatcccattcttgtttt 120
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 261 tggagtcaggggaacaggggaatcagaaccaactcctgcccctgatcccattcttgtttt 320
Query: 121 gttttgctttgttattttttttccagacagggtttctctgtgtagccctggctgtcctgg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gttttgctttgttattttttttccagacagggtttctctgtgtagccctggctgtcctgg 380
Query: 181 aactcactctgtagaccaggctggcctcgaactcagaaatccacctgcctctgcctccca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aactcactctgtagaccaggctggcctcgaactcagaaatccacctgcctctgcctccca 440
Query: 241 agtgctgggattaaaggcgtgcgccaccacacccagctcc 280
||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agtgctgggattaaaggcgtgcgccaccacacccagctcc 480
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 280
Length of database: 680
Length adjustment: 9
Effective length of query: 271
Effective length of database: 671
Effective search space: 181841
Effective search space used: 181841
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
