BAC Information

Click to search

BAC

Clone NameMSMg01-191F04
Chromosome5 (Build37)
Map Location 93,752,643 - 93,753,291
singlet/doubletsinglet
Overlap genenone
Upstream geneCxcl9, Cxcl10, Cxcl11, LOC100040228, Art3, Nup54, Scarb2, Gm1381, D5Ertd593e, 4932413O14Rik, Shroom3, LOC623798, Ankrd56, Sept11, Ccni, LOC100040826, 2010109A12Rik, Ccng2
Downstream geneLOC632115, EG330129, LOC100040885, LOC666064, LOC100040909, C87414, LOC666075, LOC666077, LOC666081, EG665802, LOC100040408, LOC100040981, EG622719, LOC100041003, BC061212, EG622744, LOC100041032, LOC100041042, LOC624421
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-191F04.T7 (MSMg01no191_f04.b1)MSMg01-191F04.TJ (MSMg01no191_f04.g1)
ACCAG381384AG381385
length731741
length of high quality
(start - end)
645 (46 - 690)282 (77 - 358)
definitionCHROMAT_FILE: MSMg01no191_f04.b1 PHD_FILE: MSMg01no191_f04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:07:53 2005CHROMAT_FILE: MSMg01no191_f04.g1 PHD_FILE: MSMg01no191_f04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:07:53 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCACTGTGATTGCCACTAGCTCAGCTCATAAGCACAGCTCACTTGTG
TTGTCTCTGTAAAATTGAGAATTACCTTACCTTTCTGACTAGAAATGGAC
CCTCTGTCCCTTGGTCATGTTCCTGGTAAACATTCACACTGCATTTCAAT
TTTTAGACTATTTTGCAATAGCAGTTCTGGCATGCTCTTTTTTTTTTTTT
TTTGTCTGTGGTTTCCAGGTGCCCTCTATTGGTAGATGCTTTTAAAGCTC
CAATTGGTGAAACTACAGATGGGAGACCAGGCTTTCCTCTATGGCTTTAG
CCCTGTCTTAGTTTTATTCTCTGCGCTTTTTCTCATCTCTCTGGGGACAT
GCTTCTAGTTTCTGGCATCAATACTTAGCCATAACCATCCCCCTATCTTG
CCCATCTGAGAGTACTTTCTCATTTGAATAATCTTGGAACTTGAAAATTT
GGGCTAGCCTTAAAAACACACACACACACACACACACACACACACACACA
CACACACACACACACACACGTACACCCCTAAGCTCTTCCTGAACGACATA
AAAGACCACTTATTCACCACCCTCACCTCATCTCAACAGGGAGGTTGCTG
CTGGAGTCTGCTTCTGTTCTCAGGGTATCCAGGAACACAGCACACTGGGC
TGGACTGGAATGAATGAAGTTTATCTGGGTG
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCCTGTAATTCTAACTGGTCTACA
TTTTTATGTTACTTGGCCTTCATCCCTATCATGTTTTACTATTTTTTTCT
TTGTTCTATATGTTTAGTGTTTGATTATTATGTGGCAGAATGAGGATTTT
GTTTTTTGCCAATCTACTACTTGTTCTGTAAGTTTCTTTTATGTTTATAG
GCATGCTTTCCTTTAGGGAAAATAATTTTTCTTCTGTAATTTTGTTAAAC
ATATATTCTCAGCCTCTGAGTTGGGGCTTGAGGCTTATGAATATAGCCTG
GTTGTGCTATTTTTTTCCCACCCCACCCCCCACCTATTGTGGACCAAGAA
ATAGACAGCAGAGGGTTCAGGGATTGCAAAAACAAAACTCCCTGACACTG
AGTTTGCTCAGAGGGGCCAGGAGGCAAGGAATTGTGATAGTGTTCAGTAA
TATTTTATACATCAAAGCCACTAGCAAAACATCTTAAGCTAACATTATTA
ACAACCACCATTTCCAACTCTTTCTAAGGGTGGTTGACATTAATAAAAAT
CTACAGCTATAAATCCTTTCTGAGGGTGGGGGTTAAACCATTAATCTGCT
GTGAAGGCTTGCTTGGAAAAGATCATTCCCTATTATTGGAAGTGCCCATG
ATACTGCCCAGCATGGGCGCTGAAGCTTTCCTTATATATTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no191_f04.b1 MSMg01no191_f04.b1 CHROMAT_FILE:
MSMg01no191_f04.b1 PHD_FILE: MSMg01no191_f04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:07:53 2005
         (645 letters)



>mm_chr5_93752448_93753491
          Length = 1044

 Score = 1120 bits (579), Expect = 0.0
 Identities = 629/655 (96%), Gaps = 20/655 (3%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcactgtgattgccactagctcagctcataagcacagctcacttgtgttgtctctg 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 196 gaattcactgtgattgccactagctcagctcataagcacagctcacttgtgttgtctctg 255

                                                                       
Query: 65  taaaattgagaattaccttacctttctgactagaaatggaccctctgtcccttggtcatg 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 256 taaaattgagaattaccttacctttctgactagaaatggaccctctgtcccttggtcatg 315

                                                                       
Query: 125 ttcctggtaaacattcacactgcatttcaatttttagactattttgcaatagcagttctg 184
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 316 ttcctgggaaacattcacactgcatttcaatttttagactattttgcaatagcagttctg 375

                                                                       
Query: 185 gcatgctcttttttttttttttttgtctgtggtttccaggtgccctctattggtagatgc 244
           |||||||||||||||||||     ||||||||||||||||||||||||||||||||||||
Sbjct: 376 gcatgctcttttttttttt-----gtctgtggtttccaggtgccctctattggtagatgc 430

                                                                       
Query: 245 ttttaaagctccaattggtgaaactacagatgggagaccaggctttcctctatggcttta 304
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 atttaaagctccaattggtgaaactacagatgggagaccaggctttcctctatggcttta 490

                                                                       
Query: 305 gccctgtcttagttttattctctgcgctttttctcatctctctggggacatgcttctagt 364
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 491 gccctgtcttagttttattctctgggctttttctcatctctctggggacatgcttctagt 550

                                                                       
Query: 365 ttctggcatcaatacttagccataaccatccccctatcttgcccatctgagagtactttc 424
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 551 ttctggcatcaatacttagccacaaccatccccctatcttgcccatctgagagtactttc 610

                                                                       
Query: 425 tcatttgaataatcttggaacttgaaaatttgggctagccttaaaaacacacacacacac 484
           |||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||
Sbjct: 611 tcatttgaataatcttggaacttgaacatttgggctagccttaaacacacacacacacac 670

                                                                       
Query: 485 acacacacacacacacacacacac--acac--acac--acac--------acacgtacac 530
           ||||||||||||||||||||||||  ||||  ||||  ||||        ||||||||||
Sbjct: 671 acacacacacacacacacacacacgcacacgcacacgcacacgtacacgtacacgtacac 730

                                                                       
Query: 531 ccctaagctcttcctgaacgacataaaagaccacttattcaccaccctcacctcatctca 590
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 731 ccctaagctcttcctgaacgacataaaagaccacttattcac-accctcacctcatctca 789

                                                                  
Query: 591 acagggaggttgctgctggagtctgcttctgttctcagggtatccaggaacacag 645
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 790 acagggaggttgctgctggagtctgcttctgttctcagggtatccaggaacacag 844


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 48
Number of extensions: 23
Number of successful extensions: 23
Number of sequences better than 10.0: 1
Number of HSP's gapped: 15
Number of HSP's successfully gapped: 1
Length of query: 645
Length of database: 1044
Length adjustment: 10
Effective length of query: 635
Effective length of database: 1034
Effective search space:   656590
Effective search space used:   656590
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)