Query= MSMg01no191_g12.b1 MSMg01no191_g12.b1 CHROMAT_FILE:
MSMg01no191_g12.b1 PHD_FILE: MSMg01no191_g12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:08:00 2005
(312 letters)
>mm_chr5_54879612_54880321
Length = 710
Score = 576 bits (298), Expect = e-169
Identities = 302/304 (99%), Gaps = 2/304 (0%)
Strand = Plus / Minus
Query: 7 gaattctgttccttacacccacattttcctggcagtgccctggacttattttatctgctc 66
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 gaattctgttccttacacccacattttcctggcagtgccctggacttattttatctgctc 449
Query: 67 tgggagggactgatggtgataaacagttgtactttcaaacacagagtttggggtctttta 126
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 tgggagggactgatggtgataaacagttgtactttcaaacacagagtttggggtctttta 389
Query: 127 tagtctccttaaacactgcttgagaactaattccgttttctatttatagtttatttgtct 186
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 tagtctccttaaacactgcttgagaactaattccgttttctatttatagtttatttgtct 329
Query: 187 ctctgcagtcataatgtgaaggtcaagcagccagggaatgcttttactgttggtctttct 246
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 ctctgcagtcataatgtgaaggtcaagcagccagggaatgcttttactgttggtctttct 269
Query: 247 tagcctgatccttattaattaggtatattttctcttttttttattagatattttctctat 306
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 268 tagcctgatccttattaattaggtatattttct--tttttttattagatattttctctat 211
Query: 307 ttac 310
||||
Sbjct: 210 ttac 207
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 312
Length of database: 710
Length adjustment: 9
Effective length of query: 303
Effective length of database: 701
Effective search space: 212403
Effective search space used: 212403
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no191_g12.g1 MSMg01no191_g12.g1 CHROMAT_FILE:
MSMg01no191_g12.g1 PHD_FILE: MSMg01no191_g12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:08:00 2005
(274 letters)
>mm_chr5_54748434_54749106
Length = 673
Score = 507 bits (262), Expect = e-148
Identities = 271/274 (98%), Gaps = 1/274 (0%)
Strand = Plus / Plus
Query: 1 tttgcttcttttgttagatgcttaatattggagtagatacaagccaggggagcttatttt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttgcttcttttgttagatgcttaatattggagtagatacaagccaggggagcttatttt 260
Query: 61 aatcaggggatatttttaaggtttgcaacagtgagttacattagctctatctagaaagac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aatcaggggatatttttaaggtttgcaacagtgagttacattagctctatctagaaagac 320
Query: 121 atttcttttctttattctcaaccaactcaacctgacgcactttctttttaacaaaggcag 180
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 321 atttcttttctttattctcaaccaactcaacctgacacactttctttttaacaaaggcag 380
Query: 181 gagaaggaagagagaaaataagggaggaataaatcgagtataatgtggcaaatgcctttc 240
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 381 gagaaggaagagagaaaataagggaggaataaatcgagtataatgtggcagatgcctttc 440
Query: 241 tctgctgcctataattgtggaaagaaacaatacg 274
|| |||||||||||||||||||||||||||||||
Sbjct: 441 tc-gctgcctataattgtggaaagaaacaatacg 473
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 274
Length of database: 673
Length adjustment: 9
Effective length of query: 265
Effective length of database: 664
Effective search space: 175960
Effective search space used: 175960
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
