Query= MSMg01no191_j06.b1 MSMg01no191_j06.b1 CHROMAT_FILE:
MSMg01no191_j06.b1 PHD_FILE: MSMg01no191_j06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:08:14 2005
(494 letters)
>mm_chr5_93028900_93029790
Length = 891
Score = 878 bits (454), Expect = 0.0
Identities = 481/490 (98%), Gaps = 3/490 (0%)
Strand = Plus / Plus
Query: 5 gaattcacagaactcaaggaaaccatgggtttatgctcactggattataatggaaggtat 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcacagaactcaaggaaaccatgggtttatgctcactggattataatggaaggtat 264
Query: 65 gcgctatggtttggatattccaaactgtatatggtgaacccaagttcaccgttagatctc 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gcgctatggtttggatattccaaactgtatatggtgaacccaagttcaccgttagatctc 324
Query: 125 taattaaagacatgaaatagagttgacaaagagcataccacgttctatgtctgtagtgct 184
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 325 taattaaagacatgaaatagagttgacaaagatcataccacgttctatgtctgtagtgct 384
Query: 185 tgcaaggcacgtggggatctgtataagttaagaaagccactgtagatggaaagggccagc 244
||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||
Sbjct: 385 tgcaaggcacgtggggatctgtataagttaagaaagccactgtggatggaaagagccagc 444
Query: 245 gagggcggggccgagaggttaggagggcaggtttttgctgtgagatgcagggtcattggg 304
||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct: 445 gagggcggggccgagaggtcaggagggcaggcttttgctgtgagatgcagggtcattggg 504
Query: 305 cagtcttccatgaaggtctgacatggttgcagttggctctactagcctctagtttgaaga 364
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 505 cagtcttccatgaaggtctgacatggttgcagttggctctattagcctctagtttgaaga 564
Query: 365 caggcatcatgtaggggcttgtgactcagtatagcctgtagtgatgtcttcacctgagtg 424
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 565 caggcatcatgtaggggcttgtgactcagtatagc-tgtagtgatgtcttcacctgagtg 623
Query: 425 agtttgattggatgtgtttgtcaggtagctcatcctttctcctcttcttcttcttttttt 484
||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||
Sbjct: 624 agtttgattggatgtgtttgtcaggtagctcatcctttctcctcttctt-tt-ttttttt 681
Query: 485 ttttttaaag 494
||||||||||
Sbjct: 682 ttttttaaag 691
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 494
Length of database: 891
Length adjustment: 10
Effective length of query: 484
Effective length of database: 881
Effective search space: 426404
Effective search space used: 426404
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no191_j06.g1 MSMg01no191_j06.g1 CHROMAT_FILE:
MSMg01no191_j06.g1 PHD_FILE: MSMg01no191_j06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:08:14 2005
(285 letters)
>mm_chr5_93140507_93141191
Length = 685
Score = 520 bits (269), Expect = e-152
Identities = 281/285 (98%)
Strand = Plus / Minus
Query: 1 aatgtaagtacgaccctgtccaatgagaccaaacatttagtacaattcaattctctgtgc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 aatgtaagtacgaccctgtccaatgagaccaaacatttagtacaattcaattctctgtgc 314
Query: 61 ttctcctactagctcacaacaagggtaggcatggtgggagaggctggggcaggatgctga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 ttctcctactagctcacaacaagggtaggcatggtgggagaggctggggcaggatgctga 254
Query: 121 ggctccagccaagtagacacataccattaacaagatggctctaaatagggagtgcaatca 180
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
Sbjct: 253 ggctccagccaagtagacacataccattaacaagatggctctaaatacggagtgcaatta 194
Query: 181 cactcctatgtataagctctagaaaacaaatatccatacaatacattctgaatgttcacg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 193 cactcctatgtataagctctagaaaacaaatatccatacaatacattctgaatgttcacg 134
Query: 241 gtaagcggtattggtagcaggagaaaaggggagtcaactcacatg 285
|||||||||||| ||||||||||||||||||||| ||||||||||
Sbjct: 133 gtaagcggtattcgtagcaggagaaaaggggagttaactcacatg 89
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 285
Length of database: 685
Length adjustment: 9
Effective length of query: 276
Effective length of database: 676
Effective search space: 186576
Effective search space used: 186576
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
