BAC Information

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BAC

Clone NameMSMg01-191K12
Chromosome5 (Build37)
Map Location 7,591,371 - 7,591,650
singlet/doubletsinglet
Overlap genenone
Upstream geneEG435830, LOC100042651, 4921511H03Rik, LOC242823
Downstream geneLOC667767, EG546855, Steap4, Sri, LOC433840, Adam22, Dbf4, Slc25a40, Gm440
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-191K12.T7 (MSMg01no191_k12.b1)MSMg01-191K12.TJ (MSMg01no191_k12.g1)
ACCAG381596AG381597
length654674
length of high quality
(start - end)
312 (3 - 314)281 (57 - 337)
definitionCHROMAT_FILE: MSMg01no191_k12.b1 PHD_FILE: MSMg01no191_k12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:08:21 2005CHROMAT_FILE: MSMg01no191_k12.g1 PHD_FILE: MSMg01no191_k12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:08:21 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GGATCCGCGGAATTCTCCAAGAAAAGACAGCTTATGTCCAGGAATGTACA
CAACTTGAATCTGAGCCATATCTTCTGCTGAAGACCTACATAAGGACAAT
GGAAGGAGAAAGGCTCCCTTCTTCTTCTCCTGCTTGCACTTACTTGCCAG
CACATCTGTTAAAACCTACTTCTTCAGGATTCCAACTTACACAGAAGACC
AGCTGAAACACCTAGCCTTGTGGGACTGAACAACACAGTTGCCCACTGTT
GTATTAATAGGACTGCAGACTGTATATTATTCCAATAATTTCCCTTAATA
TATAGACACATTCTTTTTGTTCTCCCCCCCCCCCCAACTCTGACTAATAC
AGAGGTATATGGCTTTAGGCACATGAAGAAATTGGTCACATTGCTTCGGT
AGTTAGGAAGCAATGAGAAGTAAACACTACCCAACTCATTTTTCTTGTCA
TTTAATGAGGGACTCAGACCATGGAATGCCGTCTCCCACATTTAGACTAT
ATATCACTATCACCTCAGCTAACCCTAACCACAGTTTCACTCATAATCAT
GCCTAAATATTTATATTCCTCGTGACTCTTCAAACATATAATTGACTGCC
ACATTTAATTGTCATGGATATAAACATACCACGTACATAGGGTATGACGA
AAAN
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXACATACCATGTGATTTGTGGGCATTAGAACAGGGCTTAGTATCA
GACCTGACTTATTGATTGCTGCACATTAAGAAATAATTAAAACATAGAAG
CCATCTAGTGGAACTTGCTCTGTAAATTAGCTGACAATGGCAAAGATGAA
TAAGATTTGATGAATGTTATGTAGTTGGCTTGTGTTAAAACAATTTGTAG
GGGCTAGGGAGATGTATCAGTGGGTGACATTGCTTGATGCACAATCCACA
TGACATCAAGCATAACAGCATCAGCATCTGCAATCCTTTTTATACTTCCC
CCGACATCCCAGACAGAAGTATAACAGTAACTTTTACTTTCCTGGCGTAA
TTAGAAGAAAAAGAAGCTTACTGCGGAGTAGGATCACCCTTTCTAGTACT
TTCTGAACTCTGGCTGGTAGGTTTAACTTATCTGTTTCTAACCAAACTCC
TCTCCAAGGTGACTGATGCAATCTGACTTCACTCACCTCACTGAATTGCT
CTCCTTGGCTTTTAAATTAACTCTGGAAATCTGTTCAAATCTTCTTTTTT
TTTTTTTTCCCTTTTTTATCAGGAATTCCGCTCATTTACATTTGCAATGC
TACACCAAAAGTCCCCCATAGTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no191_k12.g1 MSMg01no191_k12.g1 CHROMAT_FILE:
MSMg01no191_k12.g1 PHD_FILE: MSMg01no191_k12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:08:21 2005
         (281 letters)



>mm_chr5_7591171_7591851
          Length = 681

 Score =  534 bits (276), Expect = e-156
 Identities = 279/280 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   acataccatgtgatttgtgggcattagaacagggcttagtatcagacctgacttattgat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 480 acataccatgtgatttgtgggcattagaacagggcttagtatcagacctgacttattgat 421

                                                                       
Query: 61  tgctgcacattaagaaataattaaaacatagaagccatctagtggaacttgctctgtaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 420 tgctgcacattaagaaataattaaaacatagaagccatctagtggaacttgctctgtaaa 361

                                                                       
Query: 121 ttagctgacaatggcaaagatgaataagatttgatgaatgttatgtagttggcttgtgtt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 360 ttagctgacaatggcaaagatgaataagatttgatgaatgttatgtagttggcttgtgtt 301

                                                                       
Query: 181 aaaacaatttgtaggggctagggagatgtatcagtgggtgacattgcttgatgcacaatc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 300 aaaacaatttgtaggggctagggagatgtatcagtgggtgacattgcttgatgcacaatc 241

                                                   
Query: 241 cacatgacatcaagcataacagcatcagcatctgcaatcc 280
           |||| |||||||||||||||||||||||||||||||||||
Sbjct: 240 cacaggacatcaagcataacagcatcagcatctgcaatcc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 281
Length of database: 681
Length adjustment: 9
Effective length of query: 272
Effective length of database: 672
Effective search space:   182784
Effective search space used:   182784
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)