BAC Information

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BAC

Clone NameMSMg01-191M14
Chromosome5 (Build37)
Map Location 40,028,242 - 40,028,521
singlet/doubletsinglet
Overlap geneHs3st1
Upstream gene6820424L24Rik, Clnk, LOC384174
Downstream geneEG665839, LOC100040502
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-191M14.T7 (MSMg01no191_m14.b1)MSMg01-191M14.TJ (MSMg01no191_m14.g1)
ACCAG381675AG381676
length693700
length of high quality
(start - end)
306 (45 - 350)280 (77 - 356)
definitionCHROMAT_FILE: MSMg01no191_m14.b1 PHD_FILE: MSMg01no191_m14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:08:31 2005CHROMAT_FILE: MSMg01no191_m14.g1 PHD_FILE: MSMg01no191_m14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:08:32 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTCACCTGAGGAATACCGAATGGCAGAGAAGCACCTGAAAAAATGCT
CAACATCCTTAATCATCAGGGAAATGCAAATCAAAACAACCCTGAGATTC
CACCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACAGCAG
ATGCTGGCGTGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGGTGGG
ATTGCAGGCTTGTACAACCACTCTGGAGATCAGTCTGGCGGTTCCTCAGA
AAACTGGATATAGTACTACCGGAGGATCCAGCAATACCTCTCCTGGGCAT
ATATCCTGATTATCNNNACGTGCCCCAGAAGGACACATGCTCCACTATGT
TCATAGCAGCCTTATTAATAAAAAACAGAAGCTGGAAGGAGCCCAGATGC
CCCTCAACAGAGGAATGGATACAGAAGATGTGGTACATCTACACAATGGA
GTACTACTCAGCTATTAAAAAGAATGAATTTATGAAATTCCTGGCCAAAT
GGATGGACCTGGAGGGCATCATCCTGAGTGAGGTAACACATTCACAAAGG
AACTCACACAATATGTACTCACTGACAAGTGGATATTAGCCCATAATCTT
ATTATACCCATGATATAAGATACTATTTCCTATACACAGGAAA
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCTGCAGATTCAGGGCTTGTAAGCC
CTGCAGTAGGTTGTTTTATGTAAATGTCTTCATTCTTTCATTTAGGAGAG
TCAATCAAAGTCCTATATCAGCACTTAGAATACAGTGAGAGAAAGGTGAT
TGCAGATGAAGCTGGAATGAAAAGGCATGCTTGCCTTGCTGTGCTCAGAA
AAAATAACTGCACCAGAAACAGGGACCCGAGCAGGCTGAAAGTCTCCTAG
GGAAAGCTGGTTTGCCCTTGACTCCCACCCCTTCTCCAAACAGACTCTTT
CCAGCGTATTTTTTACCACCCCCCCCCCCCGTCAGGGACAGATATCTGAG
ATTCTATTTTCGAATTTTTTTGAAATATGTTTTTGTTTTGCTGGTATTAC
GCGTTTGTGTTGGCTTTCAATAATGGGTGACTTTTCTGGGCCTAAATTTT
TCTCAACATTATTCTGCAGCTATAAAGACATACAAGTGCCTAGTGCCATG
CTCAGGAAGTTGCCTTTGGTAAAGTTGATAGGTTTCACAGATGCAAATAT
AAGGCTGCTAATGAAATTTCAGAAAAACAATAAGCAACAGTTTAGGTGTA
TCCCAGATACTTACAAATTCATTTACTGTGGACTGAGGATACAGGTTAGG

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no191_m14.g1 MSMg01no191_m14.g1 CHROMAT_FILE:
MSMg01no191_m14.g1 PHD_FILE: MSMg01no191_m14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:08:32 2005
         (280 letters)



>mm_chr5_40028042_40028721
          Length = 680

 Score =  542 bits (280), Expect = e-158
 Identities = 280/280 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctgcagattcagggcttgtaagccctgcagtaggttgttttatgtaaatgtcttcattct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 480 ctgcagattcagggcttgtaagccctgcagtaggttgttttatgtaaatgtcttcattct 421

                                                                       
Query: 61  ttcatttaggagagtcaatcaaagtcctatatcagcacttagaatacagtgagagaaagg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 420 ttcatttaggagagtcaatcaaagtcctatatcagcacttagaatacagtgagagaaagg 361

                                                                       
Query: 121 tgattgcagatgaagctggaatgaaaaggcatgcttgccttgctgtgctcagaaaaaata 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 360 tgattgcagatgaagctggaatgaaaaggcatgcttgccttgctgtgctcagaaaaaata 301

                                                                       
Query: 181 actgcaccagaaacagggacccgagcaggctgaaagtctcctagggaaagctggtttgcc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 300 actgcaccagaaacagggacccgagcaggctgaaagtctcctagggaaagctggtttgcc 241

                                                   
Query: 241 cttgactcccaccccttctccaaacagactctttccagcg 280
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 240 cttgactcccaccccttctccaaacagactctttccagcg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 280
Length of database: 680
Length adjustment: 9
Effective length of query: 271
Effective length of database: 671
Effective search space:   181841
Effective search space used:   181841
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)