BAC Information

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BAC

Clone NameMSMg01-192A17
Chromosome5 (Build37)
Map Location 19,043,714 - 19,043,994
singlet/doubletsinglet
Overlap geneMagi2
Upstream gene4921504A21Rik
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-192A17.T7 (MSMg01no192_a17.b1)MSMg01-192A17.TJ (MSMg01no192_a17.g1)
ACCAG381856AG381857
length1,2601,414
length of high quality
(start - end)
282 (115 - 396)---
definitionCHROMAT_FILE: MSMg01no192_a17.b1 PHD_FILE: MSMg01no192_a17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:08:54 2005CHROMAT_FILE: MSMg01no192_a17.g1 PHD_FILE: MSMg01no192_a17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:08:54 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNGAGCTGTGGGCCTATAGACTCACTAAGGGAGAGGATCCGCGGAATTT
GTATCCCATTGATGTCCCTTTGATGTCGAATTGCTCTGGCTAGAACTTCA
AGTACTACTTTGAATAGATAGGGAGAAAGTGGGCAGCCTTGTCTAGTCCC
TGATTTTAATGGGATTGCTCCGAGTTTCTCTCCATTTGTTTTGATGTTGG
CTACTGGTTTGCTTTATCCAATGTTTCATCCTTAATGGATGATAATTTTT
GGAAACAAATTTCTTCACATCCCAAATTACAATTTAAAGAGGAACAGTAA
GAGTCTTTTTGTTCTTTAATCCCTCTGATTAAAATGCACATCCCATTTCC
CTCTTTCATGACTTTAATGAGCATCAATCAGAATCACCCACAAGTGTTTT
TTTTCACAAGGAACTCCAAGGAATGGCAATATCCAAAGAGGATCCATTTT
TTTTTTTTCTCCCCCCCCGGCCAGATAAAAAGGTAAAATAAAAAAAAGAT
GGAGACNGAAGACAGAACTTGTGTCATTTTAATGATGCCAAGGTTATAAA
GCTTCTCAGGAAGAAAGAGGGGATCACTCTGCTTAGGAAAAGGGTCCCAA
GAGATGCTATGACTGTCAGCTGCTTTTTGATTACTACGGATAAATGTTTA
GTTATCTTTTTTATCATCATAAGGTCTTCTGATTTTGTACCCCCCTGTTT
TGTTTTATCATGGATTTAGTATCTGTTTCTTTATTTGATTTTGTCCCTAA
TATTTAATTTGGGGTTGGCATTTTTTTTTTTTTTTTTGTTTTCAATTTTT
TTTTTATTTTTCTTTTTTTTCTTATATATTATTTATCCCTTTTTTTTTTA
TTTTTCTTGTTATTTCTTTTTTTTTTTTTTTACTCTTCATTTTTTTTTCA
TTTTTTTTTTTCTTTATTATTTTTTTATCTCTTTCTTTTCTTATTTTTTT
TTTTTTTTTTTATTTTTCATTTTTTTTTTATTTTTTTTTTTCCTTCTTTT
TTTTTTTTATTTCTTTTTTCATTTTTTTTTTTTTCTTTTTCTATTTTTTT
CTCTTTTTTATTTTTTCATTTTTCTTCTTTTCTTTTCTTTATACTTTCTC
TTCTCCTCTTTATCTTTTCTTTTATTGCTTTTCTTTTTATTTTTATCTAT
TTATATTCTTTATTTTTCATTTTTTTTTATTTCCTTGTTTTATTTTTATC
TTCTTTTCCTTTATTATCTTTTTTTTTTTCTCTTTATATTTCTTTTTCTT
TTTTTTTATC
TTTTTTCGTGGTGTGCCTGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXCCTCTAGAAGTTGGGGAACGCCAGGGCCAAAAGGT
GGGAGTCCTTTTGTAGGGGAGTGNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNCCCCCNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNTNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTTTTTT
TTTNTTNNNNTTTTNTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTCCCCCCCCCCCTTTTTTTTTTTTTTTCTTTTTTTTCTTTTT
TTTTTTTTTCCTTTTTCTTTTTTTCTTTCTTTTTTTTTTTTTTTTTTTTC
TTTTTTCTTTTTTTTTCTTCTTTTTCTTTTTTTTTTTTCTTTTTTTTTTT
TTTTTTTTTTTTCTTTTTTTTTTTTCTTCTTTCTTTTTTTTTTTTTTTTT
TTCTTTTTCTTTTTTTTTTTTCTTTTTTTTTTTTTTTTTTTTTTTTTTTT
CTCTTTTTTTTTCTTTCTTTCTTCTTTTTTTTTTTTTTCTTTTTTTTTCT
TTTTTTTTTTTTTTTTTTTTTTTCTTTTTCTTTTTCTTTTTTTCTTTTTT
TCTTTTTTTTTCTTTTTTTTTTTTCTCTTCTCTTTTTTTTTTTTTTTTTT
TTTCTCTTTTTTCTCTCTTTCTTTTTTCTCCTTTTCTTTTCTTCTTTTTT
TTTCTCTTTTTTCTTTTCTTTTTCCTTTCTTTTTTTTTTTTTTTTTTTTT
TTTTCTTTTTTTTTTNTCCTTTTCTTCTTTTTTCTTTTCTTCTTTTTCTT
TCTTTTTTCTTTTCTTTTCTTCTTTCTTTTTCCTTCTTTTTCTTTTTCTT
TTTCTTTTTTTCTCCTTCTTTTTTTTTTTCTTTTTTCCTCTCTTTTTCTC
CTTTTCTTTTTTTTTTCTTCTTTCTTCCTTTTCTTTTTCTTTTTTTTTTC
TTTTTTTTTTTCTCTTTNTTCTTTTTTTTCTTCTTTTTTTTCTCTTTTTT
CTTCTTTTTTTTTTTTTTTTTCTCTTTCTCTTCTCTCTTTTTTTTTTTTC
CTTTTCTCTCTTTCTTTCTTTTTCTTCTTTCCTTTTTTTCTCTTCTTTTC
TTCCTTCTTTTTCTTTTCNTTCTTTCCTTTTTTTTCTTTTTCTCTCTCCT
TTCTTTTCTTNTTCTCCTCTTTCTTCTTTNTCTTCTCTTTTCTTTCTCCT
CTCTTTCTTCTTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no192_a17.b1 MSMg01no192_a17.b1 CHROMAT_FILE:
MSMg01no192_a17.b1 PHD_FILE: MSMg01no192_a17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:08:54 2005
         (282 letters)



>mm_chr5_19043514_19044195
          Length = 682

 Score =  497 bits (257), Expect = e-145
 Identities = 275/281 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   tagatagggagaaagtgggcagccttgtctagtccctgattttaatgggattgctccgag 60
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 201 tagatagggagaaagtgggcagccttgtctagtccctgattttagtgggattgctccgag 260

                                                                       
Query: 61  tttctctccatttgttttgatgttggctactggtttgctttatccaatgtttcatcctta 120
           |||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 261 tttccctccatttgttttgatgttggctactggtttgctgtatccaatgtttcatcctta 320

                                                                       
Query: 121 atggatgataatttttggaaacaaatttcttcacatcccaaattacaatttaaagaggaa 180
           ||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 321 atggatgatcatttttggaaacaaatttcttcaaatcccaaattacaatttaaagaggaa 380

                                                                       
Query: 181 cagtaagagtctttttgttctttaatccctctgattaaaatgcacatcccatttccctct 240
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 381 cagtaagagtctttttgttctttaatccctttgattaaaatgcacatcccatttccctct 440

                                                    
Query: 241 ttcatgactttaatgagcatcaatcagaatcacccacaagt 281
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttcatgactttaatgagcatcaatcagaatcacccacaagt 481


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 282
Length of database: 682
Length adjustment: 9
Effective length of query: 273
Effective length of database: 673
Effective search space:   183729
Effective search space used:   183729
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)